From 7af62dc4270d0fd83c29ed496376ef813dbd43a2 Mon Sep 17 00:00:00 2001 From: lche0021 <lche0021@student.monash.edu> Date: Tue, 21 Jul 2020 22:25:11 +1000 Subject: [PATCH] rm output_dir --- .../anaconda/2019.03-Python3.7-gcc5 | 2 - .../output_dir/anaconda/5.1.0-Python3.6-gcc5 | 2 - smoke_test/output_dir/atlas/3.10.2-gcc4 | 1 - smoke_test/output_dir/atlas/3.10.2-gcc5 | 1 - smoke_test/output_dir/bedtools/2.26.0 | 1 - smoke_test/output_dir/bismark/v0.19.1 | 1 - smoke_test/output_dir/bowtie2/2.2.9 | 1 - smoke_test/output_dir/cuda/10.1 | 2 - smoke_test/output_dir/cuda/7.5 | 2 - smoke_test/output_dir/cuda/8.0.61 | 2 - smoke_test/output_dir/cuda/9.1 | 2 - smoke_test/output_dir/cutadapt/0.16 | 1 - smoke_test/output_dir/deeptools/3.1.2 | 1 - smoke_test/output_dir/fastqc/0.11.7 | 1 - smoke_test/output_dir/fftw/3.3.4-gcc | 1 - smoke_test/output_dir/fftw/3.3.5-gcc | 1 - smoke_test/output_dir/fftw/3.3.5-gcc5 | 1 - smoke_test/output_dir/fsl/5.0.11 | 1 - smoke_test/output_dir/fsl/6.0.3 | 1 - smoke_test/output_dir/gcc/4.9.3 | 19 ----- smoke_test/output_dir/gcc/5.4.0 | 19 ----- smoke_test/output_dir/gcc/6.1.0 | 16 ---- smoke_test/output_dir/gcc/8.1.0 | 16 ---- smoke_test/output_dir/geos/3.6 | 1 - smoke_test/output_dir/gmp/6.1.2 | 1 - smoke_test/output_dir/gsl/2.2-gcc4 | 1 - smoke_test/output_dir/gsl/2.2-system | 1 - smoke_test/output_dir/hdf5/1.10.0-patch1 | 25 ------ smoke_test/output_dir/htseq/0.10.0 | 1 - smoke_test/output_dir/htslib/1.9 | 1 - smoke_test/output_dir/htslib/1.9-gcc5 | 1 - smoke_test/output_dir/java/1.8.0_77 | 4 - smoke_test/output_dir/lapack/3.6.1-gcc4 | 1 - smoke_test/output_dir/lapack/3.6.1-gcc5 | 1 - smoke_test/output_dir/libjpeg-turbo/1.4.2 | 1 - smoke_test/output_dir/libtiff/3.9.7 | 1 - smoke_test/output_dir/mpfr/3.1.5 | 1 - smoke_test/output_dir/openblas/0.2.20 | 1 - .../output_dir/openmpi/1.10.3-gcc4-mlx-verbs | 13 --- smoke_test/output_dir/openmpi/1.10.7-mlx | 13 --- smoke_test/output_dir/picard/2.9.2 | 1 - smoke_test/output_dir/python/3.6.6-gcc5 | 3 - smoke_test/output_dir/python/3.7.3-system | 3 - smoke_test/output_dir/samtools/1.7 | 4 - smoke_test/output_dir/samtools/1.9 | 4 - smoke_test/output_dir/samtools/1.9-gcc5 | 4 - smoke_test/output_dir/singularity/3.2.1 | 2 - smoke_test/output_dir/tigervnc/1.8.0 | 1 - smoke_test/output_dir/virtualgl/2.5.0 | 82 ------------------- smoke_test/output_dir/wxwidgets/3.0.3 | 1 - 50 files changed, 268 deletions(-) delete mode 100644 smoke_test/output_dir/anaconda/2019.03-Python3.7-gcc5 delete mode 100644 smoke_test/output_dir/anaconda/5.1.0-Python3.6-gcc5 delete mode 100644 smoke_test/output_dir/atlas/3.10.2-gcc4 delete mode 100644 smoke_test/output_dir/atlas/3.10.2-gcc5 delete mode 100644 smoke_test/output_dir/bedtools/2.26.0 delete mode 100644 smoke_test/output_dir/bismark/v0.19.1 delete mode 100644 smoke_test/output_dir/bowtie2/2.2.9 delete mode 100644 smoke_test/output_dir/cuda/10.1 delete mode 100644 smoke_test/output_dir/cuda/7.5 delete mode 100644 smoke_test/output_dir/cuda/8.0.61 delete mode 100644 smoke_test/output_dir/cuda/9.1 delete mode 100644 smoke_test/output_dir/cutadapt/0.16 delete mode 100644 smoke_test/output_dir/deeptools/3.1.2 delete mode 100644 smoke_test/output_dir/fastqc/0.11.7 delete mode 100644 smoke_test/output_dir/fftw/3.3.4-gcc delete mode 100644 smoke_test/output_dir/fftw/3.3.5-gcc delete mode 100644 smoke_test/output_dir/fftw/3.3.5-gcc5 delete mode 100644 smoke_test/output_dir/fsl/5.0.11 delete mode 100644 smoke_test/output_dir/fsl/6.0.3 delete mode 100644 smoke_test/output_dir/gcc/4.9.3 delete mode 100644 smoke_test/output_dir/gcc/5.4.0 delete mode 100644 smoke_test/output_dir/gcc/6.1.0 delete mode 100644 smoke_test/output_dir/gcc/8.1.0 delete mode 100644 smoke_test/output_dir/geos/3.6 delete mode 100644 smoke_test/output_dir/gmp/6.1.2 delete mode 100644 smoke_test/output_dir/gsl/2.2-gcc4 delete mode 100644 smoke_test/output_dir/gsl/2.2-system delete mode 100644 smoke_test/output_dir/hdf5/1.10.0-patch1 delete mode 100644 smoke_test/output_dir/htseq/0.10.0 delete mode 100644 smoke_test/output_dir/htslib/1.9 delete mode 100644 smoke_test/output_dir/htslib/1.9-gcc5 delete mode 100644 smoke_test/output_dir/java/1.8.0_77 delete mode 100644 smoke_test/output_dir/lapack/3.6.1-gcc4 delete mode 100644 smoke_test/output_dir/lapack/3.6.1-gcc5 delete mode 100644 smoke_test/output_dir/libjpeg-turbo/1.4.2 delete mode 100644 smoke_test/output_dir/libtiff/3.9.7 delete mode 100644 smoke_test/output_dir/mpfr/3.1.5 delete mode 100644 smoke_test/output_dir/openblas/0.2.20 delete mode 100644 smoke_test/output_dir/openmpi/1.10.3-gcc4-mlx-verbs delete mode 100644 smoke_test/output_dir/openmpi/1.10.7-mlx delete mode 100644 smoke_test/output_dir/picard/2.9.2 delete mode 100644 smoke_test/output_dir/python/3.6.6-gcc5 delete mode 100644 smoke_test/output_dir/python/3.7.3-system delete mode 100644 smoke_test/output_dir/samtools/1.7 delete mode 100644 smoke_test/output_dir/samtools/1.9 delete mode 100644 smoke_test/output_dir/samtools/1.9-gcc5 delete mode 100644 smoke_test/output_dir/singularity/3.2.1 delete mode 100644 smoke_test/output_dir/tigervnc/1.8.0 delete mode 100644 smoke_test/output_dir/virtualgl/2.5.0 delete mode 100644 smoke_test/output_dir/wxwidgets/3.0.3 diff --git a/smoke_test/output_dir/anaconda/2019.03-Python3.7-gcc5 b/smoke_test/output_dir/anaconda/2019.03-Python3.7-gcc5 deleted file mode 100644 index eecc2706..00000000 --- a/smoke_test/output_dir/anaconda/2019.03-Python3.7-gcc5 +++ /dev/null @@ -1,2 +0,0 @@ - -conda 4.6.12 diff --git a/smoke_test/output_dir/anaconda/5.1.0-Python3.6-gcc5 b/smoke_test/output_dir/anaconda/5.1.0-Python3.6-gcc5 deleted file mode 100644 index 093b5394..00000000 --- a/smoke_test/output_dir/anaconda/5.1.0-Python3.6-gcc5 +++ /dev/null @@ -1,2 +0,0 @@ - -conda 4.5.4 diff --git a/smoke_test/output_dir/atlas/3.10.2-gcc4 b/smoke_test/output_dir/atlas/3.10.2-gcc4 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/atlas/3.10.2-gcc4 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/atlas/3.10.2-gcc5 b/smoke_test/output_dir/atlas/3.10.2-gcc5 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/atlas/3.10.2-gcc5 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/bedtools/2.26.0 b/smoke_test/output_dir/bedtools/2.26.0 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/bedtools/2.26.0 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/bismark/v0.19.1 b/smoke_test/output_dir/bismark/v0.19.1 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/bismark/v0.19.1 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/bowtie2/2.2.9 b/smoke_test/output_dir/bowtie2/2.2.9 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/bowtie2/2.2.9 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/cuda/10.1 b/smoke_test/output_dir/cuda/10.1 deleted file mode 100644 index db604553..00000000 --- a/smoke_test/output_dir/cuda/10.1 +++ /dev/null @@ -1,2 +0,0 @@ - -./tests/cuda/bashcmd: line 2: nvidia-smi: command not found diff --git a/smoke_test/output_dir/cuda/7.5 b/smoke_test/output_dir/cuda/7.5 deleted file mode 100644 index db604553..00000000 --- a/smoke_test/output_dir/cuda/7.5 +++ /dev/null @@ -1,2 +0,0 @@ - -./tests/cuda/bashcmd: line 2: nvidia-smi: command not found diff --git a/smoke_test/output_dir/cuda/8.0.61 b/smoke_test/output_dir/cuda/8.0.61 deleted file mode 100644 index db604553..00000000 --- a/smoke_test/output_dir/cuda/8.0.61 +++ /dev/null @@ -1,2 +0,0 @@ - -./tests/cuda/bashcmd: line 2: nvidia-smi: command not found diff --git a/smoke_test/output_dir/cuda/9.1 b/smoke_test/output_dir/cuda/9.1 deleted file mode 100644 index db604553..00000000 --- a/smoke_test/output_dir/cuda/9.1 +++ /dev/null @@ -1,2 +0,0 @@ - -./tests/cuda/bashcmd: line 2: nvidia-smi: command not found diff --git a/smoke_test/output_dir/cutadapt/0.16 b/smoke_test/output_dir/cutadapt/0.16 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/cutadapt/0.16 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/deeptools/3.1.2 b/smoke_test/output_dir/deeptools/3.1.2 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/deeptools/3.1.2 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/fastqc/0.11.7 b/smoke_test/output_dir/fastqc/0.11.7 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/fastqc/0.11.7 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/fftw/3.3.4-gcc b/smoke_test/output_dir/fftw/3.3.4-gcc deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/fftw/3.3.4-gcc +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/fftw/3.3.5-gcc b/smoke_test/output_dir/fftw/3.3.5-gcc deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/fftw/3.3.5-gcc +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/fftw/3.3.5-gcc5 b/smoke_test/output_dir/fftw/3.3.5-gcc5 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/fftw/3.3.5-gcc5 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/fsl/5.0.11 b/smoke_test/output_dir/fsl/5.0.11 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/fsl/5.0.11 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/fsl/6.0.3 b/smoke_test/output_dir/fsl/6.0.3 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/fsl/6.0.3 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/gcc/4.9.3 b/smoke_test/output_dir/gcc/4.9.3 deleted file mode 100644 index 41df6f20..00000000 --- a/smoke_test/output_dir/gcc/4.9.3 +++ /dev/null @@ -1,19 +0,0 @@ - -gcc (GCC) 4.9.3 -Copyright (C) 2015 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -g++ (GCC) 4.9.3 -Copyright (C) 2015 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -GNU Fortran (GCC) 4.9.3 -Copyright (C) 2015 Free Software Foundation, Inc. - -GNU Fortran comes with NO WARRANTY, to the extent permitted by law. -You may redistribute copies of GNU Fortran -under the terms of the GNU General Public License. -For more information about these matters, see the file named COPYING - diff --git a/smoke_test/output_dir/gcc/5.4.0 b/smoke_test/output_dir/gcc/5.4.0 deleted file mode 100644 index 7e61c02c..00000000 --- a/smoke_test/output_dir/gcc/5.4.0 +++ /dev/null @@ -1,19 +0,0 @@ - -gcc (GCC) 5.4.0 -Copyright (C) 2015 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -g++ (GCC) 5.4.0 -Copyright (C) 2015 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -GNU Fortran (GCC) 5.4.0 -Copyright (C) 2015 Free Software Foundation, Inc. - -GNU Fortran comes with NO WARRANTY, to the extent permitted by law. -You may redistribute copies of GNU Fortran -under the terms of the GNU General Public License. -For more information about these matters, see the file named COPYING - diff --git a/smoke_test/output_dir/gcc/6.1.0 b/smoke_test/output_dir/gcc/6.1.0 deleted file mode 100644 index ae94e402..00000000 --- a/smoke_test/output_dir/gcc/6.1.0 +++ /dev/null @@ -1,16 +0,0 @@ - -gcc (GCC) 6.1.0 -Copyright (C) 2016 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -g++ (GCC) 6.1.0 -Copyright (C) 2016 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -GNU Fortran (GCC) 6.1.0 -Copyright (C) 2016 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - diff --git a/smoke_test/output_dir/gcc/8.1.0 b/smoke_test/output_dir/gcc/8.1.0 deleted file mode 100644 index 02574421..00000000 --- a/smoke_test/output_dir/gcc/8.1.0 +++ /dev/null @@ -1,16 +0,0 @@ - -gcc (GCC) 8.1.0 -Copyright (C) 2018 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -g++ (GCC) 8.1.0 -Copyright (C) 2018 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -GNU Fortran (GCC) 8.1.0 -Copyright (C) 2018 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - diff --git a/smoke_test/output_dir/geos/3.6 b/smoke_test/output_dir/geos/3.6 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/geos/3.6 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/gmp/6.1.2 b/smoke_test/output_dir/gmp/6.1.2 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/gmp/6.1.2 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/gsl/2.2-gcc4 b/smoke_test/output_dir/gsl/2.2-gcc4 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/gsl/2.2-gcc4 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/gsl/2.2-system b/smoke_test/output_dir/gsl/2.2-system deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/gsl/2.2-system +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/hdf5/1.10.0-patch1 b/smoke_test/output_dir/hdf5/1.10.0-patch1 deleted file mode 100644 index 807a6322..00000000 --- a/smoke_test/output_dir/hdf5/1.10.0-patch1 +++ /dev/null @@ -1,25 +0,0 @@ - -Usage: h5stat [OPTIONS] file - - OPTIONS - -h, --help Print a usage message and exit - -V, --version Print version number and exit - -f, --file Print file information - -F, --filemetadata Print file space information for file's metadata - -g, --group Print group information - -l N, --links=N Set the threshold for the # of links when printing - information for small groups. N is an integer greater - than 0. The default threshold is 10. - -G, --groupmetadata Print file space information for groups' metadata - -d, --dset Print dataset information - -m N, --dims=N Set the threshold for the dimension sizes when printing - information for small datasets. N is an integer greater - than 0. The default threshold is 10. - -D, --dsetmetadata Print file space information for datasets' metadata - -T, --dtypemetadata Print datasets' datatype information - -A, --attribute Print attribute information - -a N, --numattrs=N Set the threshold for the # of attributes when printing - information for small # of attributes. N is an integer greater - than 0. The default threshold is 10. - -s, --freespace Print free space information - -S, --summary Print summary of file space information diff --git a/smoke_test/output_dir/htseq/0.10.0 b/smoke_test/output_dir/htseq/0.10.0 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/htseq/0.10.0 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/htslib/1.9 b/smoke_test/output_dir/htslib/1.9 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/htslib/1.9 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/htslib/1.9-gcc5 b/smoke_test/output_dir/htslib/1.9-gcc5 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/htslib/1.9-gcc5 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/java/1.8.0_77 b/smoke_test/output_dir/java/1.8.0_77 deleted file mode 100644 index e7c5c461..00000000 --- a/smoke_test/output_dir/java/1.8.0_77 +++ /dev/null @@ -1,4 +0,0 @@ - -Unrecognized option: --version -Error: Could not create the Java Virtual Machine. -Error: A fatal exception has occurred. Program will exit. diff --git a/smoke_test/output_dir/lapack/3.6.1-gcc4 b/smoke_test/output_dir/lapack/3.6.1-gcc4 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/lapack/3.6.1-gcc4 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/lapack/3.6.1-gcc5 b/smoke_test/output_dir/lapack/3.6.1-gcc5 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/lapack/3.6.1-gcc5 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/libjpeg-turbo/1.4.2 b/smoke_test/output_dir/libjpeg-turbo/1.4.2 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/libjpeg-turbo/1.4.2 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/libtiff/3.9.7 b/smoke_test/output_dir/libtiff/3.9.7 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/libtiff/3.9.7 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/mpfr/3.1.5 b/smoke_test/output_dir/mpfr/3.1.5 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/mpfr/3.1.5 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/openblas/0.2.20 b/smoke_test/output_dir/openblas/0.2.20 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/openblas/0.2.20 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/openmpi/1.10.3-gcc4-mlx-verbs b/smoke_test/output_dir/openmpi/1.10.3-gcc4-mlx-verbs deleted file mode 100644 index 1114b3d5..00000000 --- a/smoke_test/output_dir/openmpi/1.10.3-gcc4-mlx-verbs +++ /dev/null @@ -1,13 +0,0 @@ - -gcc (GCC) 4.9.3 -Copyright (C) 2015 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -mpirun (Open MPI) 1.10.3 - -Report bugs to http://www.open-mpi.org/community/help/ -m3-login1 -m3-login1 -m3-login1 -m3-login1 diff --git a/smoke_test/output_dir/openmpi/1.10.7-mlx b/smoke_test/output_dir/openmpi/1.10.7-mlx deleted file mode 100644 index 1a61c8f9..00000000 --- a/smoke_test/output_dir/openmpi/1.10.7-mlx +++ /dev/null @@ -1,13 +0,0 @@ - -gcc (GCC) 5.4.0 -Copyright (C) 2015 Free Software Foundation, Inc. -This is free software; see the source for copying conditions. There is NO -warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - -mpirun (Open MPI) 1.10.7 - -Report bugs to http://www.open-mpi.org/community/help/ -m3-login1 -m3-login1 -m3-login1 -m3-login1 diff --git a/smoke_test/output_dir/picard/2.9.2 b/smoke_test/output_dir/picard/2.9.2 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/picard/2.9.2 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/python/3.6.6-gcc5 b/smoke_test/output_dir/python/3.6.6-gcc5 deleted file mode 100644 index 49dff2ea..00000000 --- a/smoke_test/output_dir/python/3.6.6-gcc5 +++ /dev/null @@ -1,3 +0,0 @@ - -Python 3.6.6 -pip 18.0 from /usr/local/python/3.6.6-gcc5/lib/python3.6/site-packages/pip (python 3.6) diff --git a/smoke_test/output_dir/python/3.7.3-system b/smoke_test/output_dir/python/3.7.3-system deleted file mode 100644 index f5839248..00000000 --- a/smoke_test/output_dir/python/3.7.3-system +++ /dev/null @@ -1,3 +0,0 @@ - -Python 2.7.5 -pip 19.2.3 from /usr/local/python/3.7.3-system/lib/python3.7/site-packages/pip (python 3.7) diff --git a/smoke_test/output_dir/samtools/1.7 b/smoke_test/output_dir/samtools/1.7 deleted file mode 100644 index 3221f2dc..00000000 --- a/smoke_test/output_dir/samtools/1.7 +++ /dev/null @@ -1,4 +0,0 @@ - -samtools 1.7 -Using htslib 1.7 -Copyright (C) 2018 Genome Research Ltd. diff --git a/smoke_test/output_dir/samtools/1.9 b/smoke_test/output_dir/samtools/1.9 deleted file mode 100644 index 4ce58590..00000000 --- a/smoke_test/output_dir/samtools/1.9 +++ /dev/null @@ -1,4 +0,0 @@ - -samtools 1.9-24-gff68e70 -Using htslib 1.9-20-ge1650a9 -Copyright (C) 2018 Genome Research Ltd. diff --git a/smoke_test/output_dir/samtools/1.9-gcc5 b/smoke_test/output_dir/samtools/1.9-gcc5 deleted file mode 100644 index 4ce58590..00000000 --- a/smoke_test/output_dir/samtools/1.9-gcc5 +++ /dev/null @@ -1,4 +0,0 @@ - -samtools 1.9-24-gff68e70 -Using htslib 1.9-20-ge1650a9 -Copyright (C) 2018 Genome Research Ltd. diff --git a/smoke_test/output_dir/singularity/3.2.1 b/smoke_test/output_dir/singularity/3.2.1 deleted file mode 100644 index eeb70ae7..00000000 --- a/smoke_test/output_dir/singularity/3.2.1 +++ /dev/null @@ -1,2 +0,0 @@ - -singularity version 3.2.1 diff --git a/smoke_test/output_dir/tigervnc/1.8.0 b/smoke_test/output_dir/tigervnc/1.8.0 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/tigervnc/1.8.0 +++ /dev/null @@ -1 +0,0 @@ - diff --git a/smoke_test/output_dir/virtualgl/2.5.0 b/smoke_test/output_dir/virtualgl/2.5.0 deleted file mode 100644 index 366e1dec..00000000 --- a/smoke_test/output_dir/virtualgl/2.5.0 +++ /dev/null @@ -1,82 +0,0 @@ - - -Usage: vglrun [options] [--] <OpenGL app> [OpenGL app arguments] - -VirtualGL options (see documentation for a more comprehensive list) - --c <c> : proxy = Send 3D images uncompressed using X11 Transport - [default for local X connections] - jpeg = Compress 3D images using JPEG/send using VGL Transport - [default for remote X connections] - rgb = Encode 3D images as RGB/send using VGL Transport - xv = Encode 3D images as YUV420P/send using XV Transport - yuv = Encode 3D images as YUV420P/send using the VGL Transport - and display on the client using X Video - [If an image transport plugin is being used, then <c> can be any - number >= 0 (default=0).] - --nodl : Don't interpose the dlopen() function. dlopen() is normally - interposed to force applications that use dlopen() to load libGL - to load VirtualGL instead. For the more common case of - applications that link directly with libGL, disabling the dlopen() - interposer makes VirtualGL less intrusive, since it will no longer - load libGL until the application actually uses that library. - --d <d> : <d> = the X Display to use for 3D rendering [default = :0.0] - --fps <f> : Limit client/server frame rate to <f> frames/sec - --gamma <g>: Set gamma correction factor to <g> (see docs) - --ge : Fool application into thinking that LD_PRELOAD is unset - --ms <s> : Force VirtualGL to use OpenGL multisampling with <s> - samples (<s> = 0 forces multisampling to be disabled) - --np <n> : Use <n> CPUs to perform image compression [default = 1] - -+/-pr : Enable/disable performance profiling output [default = disabled] - --q <q> : Compression quality [1 <= <q> <= 100] - [default = 95 for JPEG/VGL Transport. Has no effect with - X11 Transport] - --samp <s> : Chrominance subsampling factor - <s> = gray, 1x, 2x, 4x - [default = 1x for JPEG/VGL Transport. Has no effect with - X11 Transport or RGB encoding] - -+/-s : Enable/disable SSL encryption of VGL Transport or custom - image transport, if applicable. - [default = disabled. Has no effect on the VGL Transport unless - VirtualGL was built with OpenSSL support] - -+/-sp : Turn on/off frame spoiling [default = enabled] - --st <s> : left = Send only left eye buffer of stereo application - right = Send only right eye buffer of stereo application - quad = Use quad-buffered stereo if available, otherwise use - red/cyan (anaglyphic) stereo [default] - rc = Always use red/cyan (anaglyphic) stereo - gm = Always use green/magenta (anaglyphic) stereo - by = Always use blue/yellow (anaglyphic) stereo - i = Always use interleaved (passive) stereo - tb = Always use top/bottom (passive) stereo - ss = Always use side-by-side (passive) stereo - -+/-sync : Enable/disable strict 2D/3D synchronization [default = disabled] - -+/-tr : Enable/disable function call tracing (generates a lot of output) - [default = disabled] - --trans <t>: Use transport plugin contained in library libvgltrans_<t>.so - -+/-v : Enable/disable verbose VirtualGL messages [default = disabled] - -+xcb/-xcb : Enable/disable XCB interposer [default = enabled] - -+wm/-wm : Enable/disable window manager mode (for running compiz, etc.) - --64 : (Solaris only) Preload VirtualGL only into 64-bit apps --32 : (Solaris only) Preload VirtualGL only into 32-bit apps - diff --git a/smoke_test/output_dir/wxwidgets/3.0.3 b/smoke_test/output_dir/wxwidgets/3.0.3 deleted file mode 100644 index 8b137891..00000000 --- a/smoke_test/output_dir/wxwidgets/3.0.3 +++ /dev/null @@ -1 +0,0 @@ - -- GitLab