smoke_test/tests/gmp/fact.c

+
+#include "gmp.h"
+#include <stdio.h>
+#include <stdlib.h>
+#include <assert.h>
+
+void fact(int n){
+  int i;
+  mpz_t p;
+
+  mpz_init_set_ui(p,1); /* p = 1 */
+  for (i=1; i <= n ; ++i){
+    mpz_mul_ui(p,p,i); /* p = p * i */
+  }
+  printf ("%d!  =  ", n);
+  mpz_out_str(stdout,10,p);
+  mpz_clear(p);
+
+}
+
+int main(int argc, char * argv[]){
+  int n;
+
+
+  if (argc <= 1){
+    printf ("Usage: %s <number> \n", argv[0]);
+    return 2;
+  }
+
+  n = atoi(argv[1]);
+  assert( n >= 0);
+  fact(n);
+
+
+  return 1;
+}
+

smoke_test/tests/gsl/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/hdf5/bashcmd

+#!/bin/bash
+#[ -f hdf5-examples.tar.gz ] || wget https://support.hdfgroup.org/ftp/HDF5/examples/examples-by-api/hdf5-examples.tar.gz
+#[ -d hdf5-examples ] || tar -xf hdf5-examples.tar.gz
+#cd hdf5-examples/
+#
+#
+#
+#rm -r hdf5-examples hdf5-examples.tar.gz

smoke_test/tests/hdf5/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/htseq/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/htslib/bashcmd

+#!/bin/bash
+htsfile --version
+tabix --version
+bgzip --version

smoke_test/tests/htslib/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/intel/bashcmd

+#!/bin/bash
+icc --version
+

smoke_test/tests/java/bashcmd

+#!/bin/bash
+java -version

smoke_test/tests/java/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/lapack/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/libjpeg-turbo/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/libmaus/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/libtiff/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/matlab/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/merantk/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/mesa/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+

smoke_test/tests/miniconda3/bashcmd

+#!/bin/bash
+conda --version

smoke_test/tests/mpfr/bashcmd

+#!/bin/bash
+gcc sample.c $CPPFLAGS $LDFLAGS -lmpfr -o sample
+./sample
+rm sample

smoke_test/tests/mpfr/bintest

+#!/bin/bash
+name=$( realpath $0 | xargs dirname | xargs basename )
+ver=${1:-"default"}
+bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
+NAME_EXEC_EXIST=false
+for bin in $bin_dirs; do
+    for i in $(find $bin -maxdepth 1 -executable -type f ); do
+        if [[ $(basename $i) == $name ]]; then 
+            $i --version;
+            exit $?
+        fi
+    done
+done
+
+