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smoke_test/software_usage 0 → 100755
View file @ cae6bd7b
#!/bin/bash
# This script will count the number of occurence for all modules in logging and sort the them in desceding order
timestamp=$(date | sed 's/ /_/g' | sed 's/\:/\_/g' )
output=${1:-${timestamp}.txt}
MODULE_LOGGING_PATH=/projects/pMOSP/module_logging
#MODULE_LOGGING_PATH=/home/luhanc/module_logging
userlist=$(ls -d $MODULE_LOGGING_PATH/*/)
declare -A modules
modules=()
for userpath in $userlist
do
if [[ -r $userpath ]]
then
logfiles=$(ls $userpath/module_log_*)
for logfile in $logfiles
do
for i in $(cat $logfile | tr ':' '\n')
do
(( modules["$i"] ++ ))
done
done
fi
done
for k in "${!modules[@]}"
do
echo $k ' - ' ${modules["$k"]}
done |
sort -rn -k3 > $output
smoke_test/software_usage.txt 0 → 100644
View file @ cae6bd7b
libjpeg-turbo/1.4.2 - 5855
gcc/5.4.0 - 5723
virtualgl/2.5.0 - 5586
tigervnc/1.8.0 - 5061
openmpi/1.10.7-mlx - 2368
gcc/8.1.0 - 2162
gcc/4.9.3 - 2063
anaconda/5.1.0-Python3.6-gcc5 - 1635
openblas/0.2.20 - 1510
fftw/3.3.5-gcc5 - 1419
hdf5/1.10.0-patch1 - 1301
atlas/3.10.2-gcc5 - 1299
singularity/3.2.1 - 1198
gcc/6.1.0 - 1181
fftw/3.3.4-gcc - 1155
fftw/3.3.5-gcc - 1072
fsl/6.0.3 - 1025
lapack/3.6.1-gcc5 - 1023
cuda/7.5 - 1018
atlas/3.10.2-gcc4 - 936
geos/3.6 - 912
python/3.7.3-system - 889
lapack/3.6.1-gcc4 - 841
htslib/1.9-gcc5 - 836
samtools/1.9-gcc5 - 820
mpfr/3.1.5 - 785
gmp/6.1.2 - 780
picard/2.9.2 - 779
libtiff/3.9.7 - 774
fsl/5.0.11 - 771
gsl/2.2-system - 740
deeptools/3.1.2 - 731
bowtie2/2.2.9 - 710
gsl/2.2-gcc4 - 709
python/3.6.6-gcc5 - 705
cuda/10.1 - 700
cutadapt/0.16 - 699
bismark/v0.19.1 - 663
openmpi/1.10.3-gcc4-mlx-verbs - 657
fastqc/0.11.7 - 620
bedtools/2.26.0 - 608
htseq/0.10.0 - 601
htslib/1.9 - 561
cuda/8.0.61 - 557
samtools/1.9 - 551
cuda/9.1 - 540
anaconda/2019.03-Python3.7-gcc5 - 533
samtools/1.7 - 516
wxwidgets/3.0.3 - 507
python/2.7.12-gcc4 - 502
matlab/r2018a - 490
ctffind/4.1.8 - 471
cuda/10.0 - 464
openmpi/1.10.3-gcc5-mlx - 461
matlab/r2019b - 459
perl/5.28.0 - 456
cmake/3.5.2-gcc5 - 456
anaconda/5.0.1-Python2.7-gcc5 - 451
merantk/1.2.1 - 440
gsl/2.2-gcc5 - 438
python/3.6.2 - 433
libmaus/0.0.196 - 433
biobambam/0.0.191 - 432
cmake/3.5.2 - 418
singularity/3.5.2 - 412
bcftools/1.8 - 392
ucsc-genome-tools/201806 - 391
qt/5.7.1-gcc5 - 386
python/2.7.15-gcc5 - 383
R/3.6.0-mkl - 382
singularity/3.1.0 - 369
ants/20190910 - 369
python/3.7.2-gcc6 - 354
bwa/0.7.17-gcc5 - 354
mrtrix/3.0_rc3_latest - 348
mesa/default - 343
blast/2.7.1 - 338
boost/1.67.0-gcc5 - 330
freesurfer/6.0 - 327
fsl/6.0.1 - 320
python/3.5.2-gcc4 - 316
matlab/r2015b - 315
gctf/1.06_cuda8 - 300
mrtrix/3.0_rc3 - 279
cuda/9.0 - 278
trim_galore/0.4.5 - 275
matlab/r2019a - 275
freesurfer/devel-20190128 - 269
spm12/matlab2018a.r7487 - 267
squashfs-tools/4.3-0.21 - 263
cufflinks/2.2.1 - 259
macs2/2.1.1.20160309 - 257
eigen/3.3.7 - 257
molden/5.7 - 251
bwa/0.7.12 - 240
virtualgl/2.5.2 - 229
trim_galore/0.5.0 - 227
spm12/matlab2015b.r6685 - 227
tiff/4.0.8 - 222
mrtrix3tissue/5.2.8 - 221
ants/2.2.0 - 221
mricron/30apr2016 - 218
eigen/3.3.0 - 218
vmd/1.9.4 - 211
mrtrix3tissue/5.2.8-ubuntu - 208
motioncor2/2.1.10-cuda8 - 208
squashfuse/0.1.103 - 205
fsl/5.0.9 - 204
cuda/8.0 - 202
miniconda3/4.1.11-python3.5 - 199
bedtools/2.27.1-gcc5 - 199
singularity/3.5.3 - 198
python/3.6.2-static - 198
cudnn/7.3.0-cuda9 - 196
motioncor2/2.1.3.0-cuda101 - 189
zlib/1.2.11 - 182
bowtie2/2.3.5 - 179
singularity/2.5.2 - 177
spades/3.12.0 - 176
fasttree/2.1.10 - 174
pigz/2.3.4 - 172
seqtk/1.3 - 170
emboss/6.6.0 - 169
python/3.5.2-gcc5 - 160
pycharm/2018.3.3 - 160
pilon/1.22 - 160
lmdb/latest - 158
xnat-utils/0.5.5 - 157
mafft/7.310 - 157
cudnn/7.6.5-cuda10.1 - 157
protobuf/master - 154
cmake/3.10.2-gcc5 - 154
picard/2.19.0 - 151
matlab/r2017a - 150
afni/17.0.11 - 149
singularity/3.4.0 - 148
python/2.7.12-gcc5 - 146
fsleyes/0.32.0 - 146
trimmomatic/0.38 - 142
mc/4.8.21 - 140
gnuplot/5.2.1 - 140
cblas/20032302-gcc5 - 139
cudnn/7.6.5.32-cuda10 - 137
anaconda/2018.12-Python3.7-gcc6 - 135
mricrogl/1.0.20170207 - 134
prokka/1.13.3 - 133
intel/2018u3 - 133
relion/3.1_beta-latest - 130
R/3.5.1 - 130
mash/2.1.1 - 128
chrome/default - 128
gaussian/g16a03 - 126
freesurfer/5.3 - 126
mricrogl/20180623 - 124
vt/0.57 - 123
matlab/r2016a - 122
skesa/2.3 - 120
gnuparallel/20190122 - 116
fiji/current - 115
mkl/2018u3 - 111
cmake/3.15.1-gcc5 - 111
chimera/1.11 - 111
gflags/master - 110
glog/master - 109
singularity/3.2.0 - 108
cmake/3.10.2-gcc4 - 108
cdhit/4.8.1 - 108
velvet/1.2.10 - 107
anaconda/5.0.1-Python3.6-gcc5 - 107
snippy/4.3.8 - 104
mlst/2.15 - 104
flash/1.2.11-gcc5 - 103
shovill/1.0.4 - 102
freebayes/0.9.9 - 102
python/2.7.11-gcc - 101
lighter/1.1.2 - 100
gpucomputingsdk/4.0.17 - 100
cryosparc/v2 - 100
blas/3.8.0-gcc5 - 100
kraken2/2.0.7-beta - 99
boost/1.72.0-gcc8 - 99
rstudio/1.1.463-r3.6.0-mkl - 98
boost/1.62.0-gcc4 - 96
avizo/9.5.0 - 96
ants/2.3.1 - 96
abricate/0.8.13 - 96
itk/4.10.0-gcc4 - 95
avizo/9.7 - 95
tensorflow/2.0.0-gpu - 94
muscle/3.8.31 - 94
megahit/1.1.3 - 93
R/3.5.2-openblas - 92
samclip/0.2 - 91
cutadapt/2.7 - 90
libcublas/10.2.1.243-cuda10 - 89
atom/1.39.1 - 89
lapack/3.8.0-gcc5 - 88
git/2.8.1 - 88
singularity/3.0 - 85
kraken/1.1.1 - 85
freesurfer/6.0-patch - 85
pytorch/1.3-cuda10 - 84
matlab/r2017b - 84
fsleyes/0.24.3 - 84
snappy/master - 83
singularity/2.4.5 - 83
perl/5.24.0 - 83
vtk/7.0.0 - 82
deeptools/3.1.3 - 82
nullarbor/2.0.20181010 - 81
fiji/20160808 - 81
chimera/1.13 - 81
relion/3.0-stable - 80
imod/4.9.9 - 80
openmpi/3.1.4-mlx - 79
rdkit/2019.03.3.0 - 78
matlab/r2019b-container - 78
fsl/6.0.0 - 77
blast+/2.9.0 - 77
snp-dists/0.6.3 - 76
newick-utils/1.6 - 76
dcm2niix/latest - 76
dsistudio/latest - 74
connectome/1.2.3 - 74
centrifuge/1.0.4-beta - 73
jellyfish/1.1.12 - 72
avizo/9.0.1 - 72
anaconda/5.0.1-Python3.5-gcc5 - 72
relion/3.1_beta - 71
chimera/1.14 - 71
vcftools/0.1.15 - 70
R/3.5.3-mkl - 70
convert3d/1.0.0 - 70
3dslicer/4.10.2 - 70
maven/3.3.9 - 69
itk/ansto - 69
apex/latest - 69
R/3.4.3 - 68
hdf5/1.10.5 - 68
gatk/4.1.2.0 - 68
mrtrix/0.3.15-gcc4 - 67
minimap2/2.17-r954-dirty - 67
prank/170427 - 66
itksnap/3.3.x - 66
relion/2.1 - 65
quicktree/2.5 - 65
mrtrix/3.0.0 - 65
R/3.5.0 - 64
opencv/3.4.1 - 63
leveldb/master - 63
cmake/3.10.2-gcc4-system - 63
spm12/matlab2018a.r6685 - 62
pytorch/1.1-cuda10 - 61
mcl/11-294 - 61
cmake/3.15.4-gcc8 - 61
sra-tools/2.9.6 - 60
rstudio/1.1.463 - 60
roary/3.11.2 - 60
iqtree/1.6.10 - 60
R/3.6.2-mkl - 59
sqlite3/3.30.1 - 58
mash/2.1 - 58
roary/3.12.0 - 57
openmpi/1.10.3-gcc4-mlx - 56
tractseg/2.0 - 55
imagemagick/7.0.8.23-native - 55
amira/6.5.0 - 55
racon/1.3.1 - 54
gdb/8.2.1 - 54
tophat/2.1.1 - 53
mriconvert/2.1.0 - 53
motioncor2/2.1 - 53
unicycler/0.4.7 - 52
tensorrt/6.0.1.5-cuda10 - 52
ea-utils/1.1.2-gcc5 - 52
qsiprep/.0.8.0 - 50
intel/2017u4 - 50
blast/2.2.30 - 50
avizo/9.4.0 - 50
vtk/7.0.0-gcc5 - 49
singularity/3.0.1 - 49
plink/1.9 - 49
itk/4.10.0-gcc5 - 49
eman/2.3.1 - 49
cryosparc/beta - 49
chimerax/0.8 - 49
ants/1.9.v4 - 49
motioncor2/20181020 - 48
avizo/9.3.0 - 48
voro++/0.4.6 - 47
raxml/8.2.9 - 47
R/3.3.1 - 47
xnat-utils/0.5.3 - 46
virtualgl/2.6.2 - 46
netcdf/4.4.1.1-openmpi-1.10.7-mlx - 46
eman/2.2 - 46
bcftools/1.6 - 46
relion/3.0-stable-cuda91 - 45
relion/3.0-beta - 45
quit/2.0.2 - 45
motioncor2/20181020-cuda91 - 45
freesurfer/7.1.0 - 45
ffmpeg/3.4.2 - 45
tensorflow/1.12.0-python3.6-gcc5 - 44
pysam/0.15.2-python2 - 44
fmriprep/1.5.8 - 44
texlive/2017 - 43
namd/2.13-multicore-CUDA - 43
minc-tools/2.2 - 43
hdfview/3.0 - 43
chimerax/0.91 - 43
nanconvert/latest - 42
mrtrix/.3.0.0 - 42
mango/4.0.1 - 42
cudnn/5.1 - 42
intel/2015.0.090 - 41
hmmer/3.2.1 - 41
gamess/16srs1-v2 - 41
cmake/3.5.2-gcc4 - 41
vim/8.0.0596 - 40
leveldb/master-gcc4 - 40
daris-utils/1.0 - 40
tensorflow/2.0.0-beta1 - 39
star/2.5.2b - 39
samtools/1.3.1 - 39
lapack/3.8.0-gcc5-pic - 39
imod/4.9.12 - 39
bzip2/1.0.6 - 39
gctf/1.18_cuda91 - 38
udunits2/2.2.20-2 - 37
skewer/20170212 - 37
rclone/1.49.3 - 37
prokka/1.14.6 - 37
cuda/7.0 - 37
cmake/3.15.1-gcc4-system - 37
blas/3.8.0-gcc5-pic - 37
tensorflow/1.14.0-keras - 36
spm8/matlab2017a.r6685 - 36
python/3.5.2-gcc - 36
cudnn/5.1-DL - 36
pgi/2019 - 35
mrtrix/20170712 - 35
itksnap/3.8.0 - 35
eman/2.3 - 35
python/2.7.17-gcc8 - 34
motioncorr2/20160822 - 34
tensorflow/1.4.0-python3.6-gcc5 - 33
git/2.19.0 - 33
dti-tk/2.3.1 - 33
cuda/8.0-DL - 33
singularity/2.3.1 - 32
prodigal/2.6.3 - 32
netcdf/4.4.1.1 - 32
itk/4.13.0-gcc4 - 32
analyze/12.0 - 32
paraview/4.0.1 - 31
igv/2.4.19 - 31
gautomatch/0.56 - 31
amber/18-parallel - 31
tbb/20180312oss - 30
rest/1.8 - 30
openmpi/1.10.7-intel - 30
opencv/4.1.0 - 30
mathematica/12.0.0 - 30
gatk/3.7 - 30
fastx-toolkit/0.0.13 - 30
cudnn/7.1.3-cuda9 - 30
boost/1.46.0-gcc5 - 30
bcl2fastq/2.19.1 - 30
amira/6.3.0 - 30
3dslicer/4.8.1 - 30
vmd/1.9.3 - 29
samtools/0.1.18 - 29
imod/4.8.54 - 29
cryolo/1.5.3 - 29
vep/90 - 28
tensorflow/1.3.0-python2.7.12-gcc5 - 28
subread/1.5.1 - 28
spm8/matlab2015b.r6685 - 28
pytorch/1.5-cuda10 - 28
openmpi/3.1.6-ucx - 28
kleborate/0.3.0 - 28
gurobi/9.0.0 - 28
geant4/10.05.p01 - 28
srst2/0.2.0-2019 - 27
simnibs/2.0.1g - 27
megahit/1.2.4-beta - 27
java/1.7.0_67 - 27
gromacs/2018-openmpi-cuda8.0-NVML - 27
cryo-em-processing-tool/0.1 - 27
crossmap/0.3.5 - 27
ccp4/7.0 - 27
amber/18-single-gpu - 27
lammps/20180510 - 26
gatk/3.4 - 26
niftilib/2.0.0 - 25
gdal/3.0.2 - 25
gctf/1.06_cuda8-uow - 25
gautomatch/0.53 - 25
diamond/0.9.22 - 25
cryolo/1.6.0 - 25
anaconda/4.3.1-Python3.5 - 25
rstudio/1.1.463-r3.5.3-mkl - 24
psi4/v1.1 - 24
mriqc/0.9.7 - 24
iqtree/1.5.3 - 24
imagemagick/7.0.5-7 - 24
fiji/MMI-MHTP - 24
bowtie/1.1.2 - 24
xnat-desktop/0.96 - 23
tensorflow/1.13.1-gdal - 23
prokka/1.14.5 - 23
openmpi/1.10.3-gcc5 - 23
octopus/8.4-parallel - 23
nccl/2.4.7-cuda10.0 - 23
mricron/06.2013 - 23
julia/1.3.1 - 23
iqtree/2.0-rc1 - 23
graphviz/2.30.1 - 23
bamtools/2.4.1 - 23
afni/16.2.16 - 23
vasp/5.4.4 - 22
strelka/2.8.4 - 22
nibabel/2.3.3 - 22
magma/1.6.1 - 22
fxtract/2.3 - 22
fiji/fiji-super-res - 22
eman/2.12 - 22
beagle/2.1.2 - 22
xds/monash - 21
vscode/1.39.2 - 21
singularity/3.0.2 - 21
relion/2.0beta - 21
qiime2/2019.4 - 21
openmpi/2.1.6-mlx-intel - 21
geos/3.7.2 - 21
clamms/1.1 - 21
boost/1.58.0-gcc5 - 21
anaconda/4.3.1-Python3.5-gcc5 - 21
wxgtk/3.0.2 - 20
relion/3.1.0 - 20
lammps/20181212 - 20
gubbins/2.3.2 - 20
gromacs/2018-openmpi-cuda8.0 - 20
gd-devel/2.0.35 - 20
drishti/2.6.4 - 20
circos/0.69-6 - 20
canu/1.7.1 - 20
xnat-utils/0.4.6 - 19
smcounter/10apr2017 - 19
root/5.34.32 - 19
python/.2.7.12-gcc5-sm - 19
orca/4.0.1 - 19
opencv/3.4.10-gcc5 - 19
openbabel/2.4.1 - 19
new-fugue/2010-06-02 - 19
gatk/4.0.11.0 - 19
cloudstor/2.4.2 - 19
bamtofastq/1.2.0 - 19
varscan/2.3.9 - 18
simul-atrophy/12-09-2017 - 18
relion/3.0-uow-20190115 - 18
mrtrix/0.3.15-gcc5 - 18
graphviz/2.40.1 - 18
glew/2.0-gcc5 - 18
fsleyes/0.22.4 - 18
amber/18-serial - 18
xnat-utils/0.4.9 - 17
tensorflow/1.12.0-python2.7.12-gcc5 - 17
rstudio/1.1.414 - 17
relion/3.0.7-uow - 17
proj/6.2.1 - 17
openmpi/1.10.3-gcc4-mlx-verbs-cuda75 - 17
mxtools/0.1 - 17
libtiff/4.0.10 - 17
fmriprep/1.4.1 - 17
dos2unix/7.4.0 - 17
dcmtk/3.6.3 - 17
cnvkit/0.9.5 - 17
chimerax/0.6 - 17
beast1/1.10.0 - 17
sumo/1.5.0 - 16
pplacer/v1.1.alpha19 - 16
perl/5.30.1 - 16
orca/4.2.1 - 16
iqtree/1.6.2 - 16
hisat2/2.1.0 - 16
gurobi/8.0.0 - 16
gemini/0.30.1 - 16
fooof/0.1.3 - 16
fmriprep/1.4.0 - 16
dynamo/1.1.178 - 16
snp-sites/2.5.1 - 15
simple/2.5 - 15
rstudio/1.0.143 - 15
relion/3.0.7 - 15
qiaseq-dna/1.0 - 15
paraview/5.6.0 - 15
octave/4.2.2 - 15
motioncor2/2.1.10-cuda9.1 - 15
idl/8.6 - 15
hdf5/1.10.6p - 15
gromacs/2018.4-openmpi-cuda8.0 - 15
fsleyes/0.23.0 - 15
fmriprep/1.1.1 - 15
emclarity/.1.4.3 - 15
eman/2.22 - 15
dke/latest - 15
connectome/.1.4.2 - 15
blast/2.3.0 - 15
bedtools/2.26.0-gcc5 - 15
vim/8.2 - 14
spades/3.13.1 - 14
snippy/4.4.5 - 14
smafa/0.5.0 - 14
raxml/8.2.12 - 14
R/4.0.0-openblas - 14
openfoam/5.x - 14
mrtrix/0.3.16 - 14
jdk/14 - 14
itk/4.13.1-gcc4 - 14
ilastik/1.3.3 - 14
ascp/3.5.4 - 14
amber/18-parallel-pmemd.gem - 14
wgsim/0.3.1-r13 - 13
singularity/2.4.2 - 13
relion/3.0-stable-uow - 13
relion/3.0.7-uow-cuda10.1 - 13
qiime2/2019.7-q2_scnic_2 - 13
pytorch/1.0-cuda10 - 13
pyem/v0.3 - 13
pmix/v2.2 - 13
panaroo/1.1.2 - 13
openmpi/1.10.7-mlx-intel - 13
igv/2.3.81 - 13
drishti/2.6.3 - 13
buster/20170508 - 13
umap/0.3.8 - 12
topaz/latest - 12
ska/1.0-e1968f0 - 12
relion/3.0.7-uow-mc2.1.3.0 - 12
python/.2.7.17 - 12
plumed/2.5.0 - 12
plink/2.0-alpha - 12
neuro-workshop/20191115 - 12
mummer/4.0.0.beta2-gcc5 - 12
libjpeg-turbo/1.5.1 - 12
idl/8.7 - 12
fastani/1.1 - 12
ctffind/4.1.4 - 12
ccp4/coot - 12
ccp4/7.0.072 - 12
caffe/latest - 12
armadillo/9.200-rc1 - 12
w2mhs/.matlab2018a.v2.1 - 11
spss/26 - 11
samtools/1.7-gcc5 - 11
paleomix/1.2.13.4-python2 - 11
namd/2.12-multicore - 11
mono/5.20.1.19 - 11
meshlab/2016.12-gcc5 - 11
gurobi/9.0.1 - 11
gimp/2.8 - 11
dke/latest-ft - 11
cryolo/1.7.2 - 11
cryolo/1.3.1 - 11
cmake/2.8.12.2-gcc5 - 11
cistem/1.0.0-beta - 11
chrome/80 - 11
3dslicer/4.6.0 - 11
xjview/9.7 - 10
tvips-tools/0.0.3 - 10
tbb/.2020.0 - 10
sourcetracker/2.0.1 - 10
simnibs/3.1.2 - 10
scipion/v1.0.1_2016-06-30 - 10
rstudio/1.0.44 - 10
orfm/v0.7.1 - 10
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gatan/free - 10
cryolo/1.5.6 - 10
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x2goclient/4.1.2.2 - 9
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rsem/1.3.0 - 9
relion/3.0-20181109-cuda91 - 9
qiime2/2019.1 - 9
pymol/1.8.6 - 9
pindel/0.6.3-gcc5 - 9
neuro_workflow/2017v2 - 9
meshlab/2019.03 - 9
meme/5.0.1 - 9
mauve/20150213 - 9
mathematica/11.0.1 - 9
locuszoom/1.4 - 9
libfuse/3.6.1 - 9
itk/4.8.2-gcc5 - 9
imagej/20160205 - 9
gromacs/2019.4-openmpi-cuda10.0 - 9
glog/master-gcc4 - 9
fastml/3.1 - 9
caffe-segnet/.1.0.0-rc3 - 9
bracken/2.5 - 9
vtk/5.10.1-gcc4 - 8
vep/94 - 8
vdjtools/1.2.1 - 8
sra-tools/2.9.4 - 8
slurm/17.11.4 - 8
slim/3.3.1 - 8
quicktree/2.0 - 8
pytorch/.1.5-cuda10 - 8
octopus/8.4 - 8
novactf/03.2018 - 8
mriqc/0.14.2 - 8
matlab/r2014b - 8
matlab/r2012b - 8
lofreq/2.1.3.1 - 8
kronatools/2.7.1 - 8
ismapper/2.0 - 8
ilastik/1.2.0 - 8
heudiconv/0.5.4 - 8
flye/2.3.5 - 8
fix/1.068 - 8
fastp/0.20.0 - 8
cmake/2.8.12.2 - 8
caffe_unet/18.04 - 8
beast2/2.5.0 - 8
angsd/0.931 - 8
amber/18-multi-gpus - 8
adapterremoval/2.3.1 - 8
xnatpy/0.3.18 - 7
vtk/5.10.1 - 7
visit/2.12.3 - 7
tensorflow/1.4.0-python2.7.12-gcc5 - 7
tensorflow/1.15.2-gpu - 7
tensorflow/1.14.0-keras-pydicom - 7
svs/8.8.3 - 7
sra-tools/2.9.2 - 7
singlem/0.12.1 - 7
seqgen/1.3.4 - 7
relion/3.0-uow-20181109-cuda91 - 7
relion/3.0-uow-20181109-cuda80 - 7
relion/2.1.b1 - 7
relion/1.4 - 7
pyem/v0.1-201806 - 7
parliament2/0.1.11 - 7
openfoam/5-paraview54 - 7
netcdf/4.7.1-intel - 7
mykrobe/0.8.1 - 7
manta/1.5.0-gcc5 - 7
imagescope/11.2.0.780 - 7
hpcx/2.5.0-redhat7.7 - 7
haystack_bio/0.5.5 - 7
goctf/1.1.0 - 7
go/1.13.8 - 7
genrich/v0.6 - 7
exonerate/2.4.0 - 7
cytoscape/3.4.0 - 7
cudalibs8to9/0.1 - 7
cst/2017 - 7
coot/0.8.9.1 - 7
bsoft/2.0 - 7
beast2/2.4.7 - 7
ansys/19.2 - 7
ansys/19.1 - 7
x2goclient/.4.1.2.1 - 6
workspace/4.0.2 - 6
virtualgl/.2.6.3 - 6
velvet/1.2.10-modified - 6
valgrind/3.13 - 6
turbovnc/2.0.2 - 6
tensorflow/1.10.0-pytorch-keras - 6
subversion/1.9.5 - 6
sqlite3/.3.30.1 - 6
relion/3.0.5-uow - 6
qiime1/1.9.1 - 6
pagmo/.2.13.0 - 6
orca/4.2.1-216 - 6
openfoam/v1912 - 6
openbugs/.3.2.3 - 6
omero.insight/5.5.10 - 6
nlopt/2.6.1-gcc4 - 6
ninja/1.9.0 - 6
netcdf/4.7.0 - 6
nccl/master - 6
mixcr/3.0.7 - 6
mesa/13.0.5 - 6
mcr2010b/1.0 - 6
imagemagick/7.0.9-27 - 6
htslib/1.7 - 6
gtdb-tk/0.3.2 - 6
gromacs/2019.3-openmpi-cuda9.1 - 6
glm/0.9.9.5 - 6
git-annex/6.20180227 - 6
ghostscript/9.26 - 6
gflags/master-gcc4 - 6
fmriprep/1.2.5 - 6
fgbio/0.9.0 - 6
eigen/2.0.17 - 6
eclipse/4.8 - 6
dtk/0.6.4.1 - 6
ctffind/4.1.10 - 6
comsol/5.4-ee - 6
cellranger/3.0.2 - 6
cellprofiler/3.1.5 - 6
caffe/1.0.0 - 6
boost/1.58.0 - 6
biobambam2/2.0.146 - 6
bids-validator/2019.01 - 6
ashs/1.0.0 - 6
apr-util/1.6.1 - 6
adxv/1.9.12 - 6
abaqus/6.14 - 6
vaa3d/3.601 - 5
tensorrt/7.0.0.11-cuda10 - 5
tensorflow/1.15.2-python3.7.3-gcc8 - 5
tensorflow/1.10.0-pytorch - 5
snpeff/4.3t - 5
sidesplitter/120220 - 5
scipion/v1.2.1_2018-10-01 - 5
resmap/1.9.5 - 5
relion/3.1_beta-20200109 - 5
relion/3.1_beta-20191105 - 5
relion/.3.1.0 - 5
relion/.2.1-uow - 5
python/.2.7.17-gcc8 - 5
pymol/2.4.0a0 - 5
psi4/v1.3.2 - 5
proj/5.1.0 - 5
openmpi/1.10.7-1.mlx - 5
nlopt/.2.6.1-gcc5 - 5
nis-elements-viewer/4.20 - 5
nilearn/.0.6.2 - 5
motioncor2/2.1.3.0-cuda80 - 5
minizinc/2.3.1 - 5
metaphlan/2.0 - 5
kindel/0.4.2 - 5
jags/4.3.0 - 5
groot/0.8.6 - 5
gromacs/2018.7-openmpi-cuda-plumed - 5
gromacs/2016.4-openmpi-cuda8.0 - 5
go/1.11.1 - 5
git/2.25.2 - 5
geant4/10.02.p03 - 5
gctf/1.18_b2_cuda9 - 5
fix/1.064 - 5
emclarity/1.0.0 - 5
darknet/alexey - 5
cp2k/6.1.0 - 5
cellprofileranalyst/2.2.0 - 5
ccp-em/1.3.0 - 5
bison/2.7.1 - 5
avizo/2020.2 - 5
ansys/18.1 - 5
zoem/11-166 - 4
yade/2019-06-20 - 4
weblogo/3.7 - 4
vasp/5.4.4-ucx - 4
unblur/1.0.2 - 4
srst2/0.2.0 - 4
smux/0.0.1 - 4
slim/3.2 - 4
slamdunk/latest - 4
skesa/2.2.1 - 4
simul-atrophy/RJBCompilePetscMaster-190220 - 4
simul-atrophy/rjbcompilepetscmaster-04032020 - 4
roary/3.x - 4
roary/3.11.4 - 4
relion/3.1_beta-20191113 - 4
relion/3.0.5 - 4
qiime2/2018.4 - 4
qgis/3.9.0 - 4
pypy/7.0.0-3.6 - 4
picrust2/2.2.0_b - 4
paraview/ansto - 4
paml/4.9 - 4
openfoam/4.1 - 4
opendronemap/.1.3.3 - 4
nighres/1.1.0b1 - 4
mummer/3.23-gcc5 - 4
mriqc/.0.9.7 - 4
metal/2011 - 4
matlab/r2020a - 4
mapdamage/2.0.9-u1 - 4
libffi/3.2.1 - 4
jags/3.4.0 - 4
itk/.4.13.2-gcc5 - 4
imagemagick/7.0.9-27-gcc8 - 4
huygens/16.10.1-p1 - 4
htop/2.0.1 - 4
gsl/2.5-gcc4 - 4
groot/1.0.2 - 4
geant4/.10.6 - 4
gctf/1.18 - 4
gauss/9.0 - 4
gatan/uwa - 4
gamess/19srs - 4
fox/1.6.57 - 4
fastml/3.11 - 4
darknet/darknet_yolo_v3 - 4
dada2/1.14 - 4
cloudstor/2.5.4 - 4
cloudstor/2.3.1-1.1 - 4
cloudcompare/.2.10.2 - 4
chrome/80.0.3987.163 - 4
chrome/79 - 4
chimerax/0.93 - 4
cellprofiler/2.2.0 - 4
caffe_unet/2.0 - 4
caffe2/0.8.1 - 4
boost/1.62.0 - 4
beast1/1.8.4 - 4
automake/1.4-p6 - 4
atomprobe/MCbyGMSRO - 4
atomprobe/fouriertransform - 4
ariba/2.12.1 - 4
amira/2020.2 - 4
zopfli/1.0.3 - 3
yade/2019-06-20-cpu - 3
xnat-utils/0.2.1 - 3
x2goclient/.4.1.1.1 - 3
volview/3.4 - 3
vegas2/v02 - 3
tracer/1.6 - 3
tmap/3.0.1 - 3
tigervnc/.1.9.0 - 3
terastitcher/20171106 - 3
tensorflow/.1.15.2-python3.7.3-gcc8 - 3
tensorflow/1.10.0-pytorch-all - 3
tempest/1.5 - 3
swig/3.0.12 - 3
svd/1.4 - 3
stringtie/1.3.6 - 3
spectra/0.8.1 - 3
samtools/1.6 - 3
salome/9.2.0 - 3
rsync/3.1.3 - 3
rstudio/1.2.1335 - 3
roary/db170bf - 3
r-launcher/0.0.1 - 3
retools/1.3 - 3
relion/.3.1.0-uow - 3
relion/3.0-20190115 - 3
relion/3.0-20181109-cuda80 - 3
relion/2.1.b2 - 3
qupath/0.2.0-m4 - 3
qiime2/2017.9 - 3
qiaseq-dna/14.1 - 3
qhull/2015.2 - 3
python/3.7.3-static - 3
prismatic/1.1 - 3
plinkseq/0.10 - 3
phenix/1.11.1 - 3
pgi/19.4 - 3
petsc/3.10.1-gcc5 - 3
pandoc/2.7.3 - 3
openmm/.7.4 - 3
openbugs/3.2.3 - 3
nlopt/2.6.1 - 3
mrtrix/3.0.1 - 3
mpifileutils/20170922 - 3
metawrap/1.1.3 - 3
meson/0.51.0 - 3
maxquant/1.6.5.0 - 3
mathematica/.12.1.1 - 3
mantid/3.9.0 - 3
lsd/0.3beta - 3
libjpeg-turbo/1.5.1-shared - 3
ldmap/28apr15 - 3
kleborate/0.2.0 - 3
jags/3.3.0 - 3
itksnap/.3.8.0 - 3
iqtree/2.0.4-rc - 3
ior/3.2.1 - 3
intel/2018test - 3
impute2/2.3.1 - 3
imosflm/7.2.2 - 3
ilastik/1.3.3post3 - 3
hypre/2.15.0 - 3
humann/2.0 - 3
hpcx/2.5.0-redhat7.6 - 3
hotspot/4.0.0 - 3
hapflk/.1.4 - 3
gromacs/5.1.4 - 3
gromacs/2020.1-openmpi-cuda10.1 - 3
gromacs/2018.7-openmpi-cpu-only - 3
gromacs/2016.5-openmpi-cuda8.0-plumed - 3
gromacs/2016.3-openmpi-cuda8.0 - 3
gpu_burn/0.9 - 3
gimp/2.8.22 - 3
gephi/0.9.2 - 3
gem/3.3 - 3
gdal/2.3.1 - 3
gamess/2018r3 - 3
foma/0.9.18 - 3
fmriprep/1.3.0_post2 - 3
flashpca/2.0 - 3
emclarity/1.4.3 - 3
dragondisk/1.0.5 - 3
dicomnifti/2.32.1 - 3
cutadapt/2.5 - 3
cuda/4.1 - 3
cryolo/1.1.3 - 3
cplex/12.6 - 3
cellranger/2.0.1 - 3
caffe/rc4 - 3
breseq/0.33.2 - 3
bbmap/38.81 - 3
bbcp/17.12 - 3
bart/0.4.04 - 3
barrnap/0.9 - 3
bamsurgeon/1.2 - 3
axel/2.12 - 3
autometa/2019-09 - 3
atomprobe/tapsim - 3
atomprobe/SpatialAccuracy - 3
atomprobe/SDM_2D_plot - 3
atomprobe/CompTool - 3
atomprobe/CompAnalysis - 3
ariba/.2.14.4 - 3
abinit/8.8.3 - 3
yade/yade-daily-may-2019 - 2
xnat-utils/0.2.6 - 2
xnat-desktop/1.0.40 - 2
xjview/9.6 - 2
xjview/9.0 - 2
x2goclient/.4.1.2.2 - 2
x2goclient/4.1.2.1 - 2
vsearch/2.13.6 - 2
unrar/5.0 - 2
unimelb-mf-clients/0.2.7 - 2
tbb/.2020.0-gcc8 - 2
swig/4.0.1 - 2
structure/2.3.4 - 2
stringtie/1.3.5 - 2
sparsehash/2.0.3 - 2
singularity/d3d0f3fdc4390c7e14a6065543fc85dd69ba42b7 - 2
singularity/.3.5.3 - 2
scipion/v1.2.1 - 2
sas/9.4 - 2
salmon/0.14.1 - 2
rings/1.3.3 - 2
rgi/.5.1.0 - 2
relion/3.0-uow-20180917 - 2
relion/3.0-uow-20180904 - 2
relion/3.0.6-uow - 2
relion/3.0.6 - 2
relion/2.1-openmpi-1.10.7-mlx - 2
relion/2.0.6 - 2
relion/2.02 - 2
razers3/3.5.8 - 2
qhull/2003.1 - 2
pytom/0.971 - 2
python/2.7.18-gcc5 - 2
pymol/1.8.2.1 - 2
pv/1.6.6 - 2
purge_haplotigs/1.1.0 - 2
picrust2/2.1.4_b - 2
phreeqc/3.5.0 - 2
phenix/1.15.2 - 2
pgap/3958 - 2
pbzip2/1.1.13 - 2
openrefine/3.1 - 2
openpose/1.6.0 - 2
openface/2.2.0 - 2
opencv/3.4.1-gcc4 - 2
nccl/master-gcc4 - 2
nccl/2.4.7-cuda9.1 - 2
namd/2.13-multicore - 2
namd/.2.13-mpi - 2
minc-lib/2.2-git-gcc4 - 2
metaphlan/.3.0 - 2
megahit/1.2.9 - 2
mathematica/12.1.1 - 2
mantid/3.13.0 - 2
libgd/2.2.4 - 2
libarchive/.3.3.2 - 2
ldpred/1.0.6 - 2
king/2.1.6 - 2
kaptive/0.5.1 - 2
itksnap/3.8.0-beta - 2
itasser/5.1 - 2
intel/2016 - 2
illumina-utils/2.6-python3.7 - 2
illumina-utils/2.6 - 2
hyphy/2.5.0 - 2
hpcx - 2
horovod/0.16.4 - 2
hdf5/.1.10.6p - 2
gvcftools/0.17.0 - 2
guppy/3.2.4 - 2
gpu_burn/1.0 - 2
gnuparallel/20160822 - 2
git/.2.25.2 - 2
gctf/1.18_cuda8 - 2
gatktool/0.0.1 - 2
fsl/.6.0.3-slurm - 2
freesurfer/devel-20180612 - 2
freesurfer/20160922 - 2
fouriertransform/0.2.3 - 2
fiji/current.bak - 2
fcsalyzer/0.9.12 - 2
exploredti/4.8.6 - 2
emap-mytardis-shortcut/1.0.0 - 2
drishti/ansto - 2
dlib/19.20 - 2
diamond/.0.9.31 - 2
deep-complex-networks/2017 - 2
cudnn/7.1.2-cuda8 - 2
cudann/7.6.5.32-cuda10 - 2
cryolo/.1.7.3b2 - 2
cryolo/1.4.0 - 2
crisprcasfinder/1.05 - 2
cpmd/3.17.1 - 2
colmap/3.6 - 2
chrome/77 - 2
chimera/.1.14 - 2
cellprofiler/3.1.9 - 2
caffe/1.0.0-protbuf32 - 2
cactus/1.0.0 - 2
bids-validator/1.3.1 - 2
bart/0.4.04-cuda9.0 - 2
automake/1.16.1 - 2
attr/2.4.46-12 - 2
arpack/3.1.3-2 - 2
ariba/2.14.4 - 2
ants/.20190910 - 2
antismash/5.1.1 - 2
angsd/.0.931 - 2
analyze-temp/12.0 - 2
abyss/2.0.2 - 2
yasm/1.2.0-4 - 1
yade/1.20.0-gpu - 1
yade/1.20.0-cpu - 1
xds/mxbeamteam - 1
xds/20170302 - 1
vasp/.5.4.4-ucx - 1
vasp/5.4.4.eyk - 1
unimelb-mf-clients/0.3.2 - 1
umi-tools/0.5.5-python3 - 1
topaz/1.0 - 1
tensorflow/1.0.0-python2.7.12-gcc5 - 1
synopsys/3.1 - 1
surfice/7_feb_2017 - 1
spider/21.11 - 1
spades/.3.14.0 - 1
snpm/13 - 1
snappy/master-gcc4 - 1
situs/3.1 - 1
shapeit/v2_r904 - 1
shapeit/v2_r837 - 1
scrappie/1.4.1 - 1
sbt/1.2.1 - 1
sbt/0.13.15 - 1
samtools/1.8 - 1
salmon/.0.14.1 - 1
rseqc/3.0.0 - 1
rosetta/2020.08 - 1
rosetta/2018.09 - 1
rnammer/1.2 - 1
relion/.3.1_beta - 1
relion/.3.1.0_openmpi-3.1.6-ucx - 1
raspa2/.2.0.37 - 1
raremetal/4.15.1 - 1
qt5-qtwebkit/5.9.1 - 1
qiime2/2019.7-q2_scnic - 1
qiime2/2018.11 - 1
qatools/1.2 - 1
pytorch/1.0-cuda9 - 1
python/2.7.18-ucs4-gcc5 - 1
pyprismatic/1.1.16 - 1
pulchra/3.06 - 1
proj/4.9.3 - 1
ppanggolin/.0.1.0 - 1
pointless/1.10.28 - 1
plink/1.90b6.10 - 1
plink/1.7 - 1
plasmidfinder/2.1 - 1
pigz/2.3.3 - 1
phyml/3.1 - 1
phenix/1.15.1 - 1
peakseq/1.3.1 - 1
pastml/1.0 - 1
parliament2/.0.1.11 - 1
packer/1.3.5 - 1
openmpi/.4.0.2-gcc5-mlx - 1
openmpi/3.1.4-ucx - 1
openmpi/.2.1.2-gcc5 - 1
nsight/2019.5.0 - 1
ngsqctoolkit/2.3.3 - 1
nanopolish/0.11.1 - 1
nanopolish/0.10.1 - 1
namd/2.12-ibverbs-smp-cuda - 1
msm_hocr/3.0 - 1
mriqc/0.15.2.rc1 - 1
mpip/3.4.1 - 1
mpifileutils/20200701 - 1
minizinc/2 - 1
meld/0.4.14 - 1
matlab/r2017b-caffe - 1
manta/.1.6.0 - 1
magic-impute/1.5.5 - 1
libunwind/1.3.1 - 1
krakenuniq/0.5.8 - 1
kma/1.3.0 - 1
kallisto/0.43.0 - 1
julia/0.6.4 - 1
jellyfish/2.3.0-gcc5 - 1
jellyfish/2.3.0 - 1
jdk/10-20180320 - 1
imosflm/7.2.1 - 1
imagemagick/7.0.8-23 - 1
ilastik/1.4.0b5 - 1
idr/2.0.3 - 1
icm/3.8.7 - 1
hyperspy/1.4 - 1
hpcx/.2.6.0-redhat7.6 - 1
hmmer/2.4i - 1
guppy/3.5.2-gpu - 1
guppy/3.1.5-1 - 1
gubbins/.2.4.1 - 1
gst-libav/1.4.5 - 1
go/1.14.2 - 1
gmsh/3.0.3 - 1
git/2.17.0 - 1
gengetopt/2.10 - 1
geant4/10.6 - 1
gdcm/2.6.6-gcc5 - 1
gdcm/2.6.6-gcc4 - 1
gctf/1.06 - 1
gcat/e48bf8b - 1
gatk/4.0.1.1 - 1
freec/.11.5 - 1
fmriprep/1.0.15 - 1
flexbar/3.4.0 - 1
fiji/20170530 - 1
figtree/1.4.3 - 1
fdtd/8.21.1933 - 1
fdtd/2020a-r1 - 1
fastspar/0.0.7 - 1
fastQValidator/0.1.1a - 1
epacts/3.3.2 - 1
eiger2cbf/1.0 - 1
eigensoft/7.2.1 - 1
eigen/3.2.9 - 1
eclipse/4.7.3a - 1
dti-tk/2.3.1-jay - 1
diyabc/2.1.0 - 1
dftd3/0.9 - 1
dftbplus/18.2 - 1
deepmedic/0.7.0 - 1
deeplabcut/latest - 1
darknet/latest - 1
ctftilt/latest - 1
ctffind/4.1.3 - 1
ctffind/4.1.13 - 1
ctffind/4.0.17 - 1
cryosparc/cryosparc-cluster - 1
cryolo/1.4.1 - 1
cp2k/5.1.0 - 1
coventormp/1.002 - 1
comsol/5.4 - 1
comsol/5.2a - 1
cloudstor/2.4.1 - 1
chrome/78 - 1
chrome/75 - 1
chimera/.1.14.test - 1
ccp4/ccp4i - 1
casa/.5.6.1-8 - 1
caret/5.65 - 1
caffe_enet/1.0 - 1
caffe/deepvistool - 1
caffe/caffe-tsn - 1
caffe/caffe-matlab - 1
bwa/v0.7.15 - 1
bwa/0.6.2 - 1
busco/3.0.2 - 1
breseq/0.29.0 - 1
bolt-lmm/2.3.4 - 1
biscuit/0.3.8.20180515 - 1
biscuit/0.2.2 - 1
bidscoin/3 - 1
bcftools/1.7 - 1
baypass/2.2 - 1
bayescan/2.1 - 1
bayesass/3.0.4-snps - 1
bayesass/3.04 - 1
avizo/.2020.2 - 1
augustus/3.3.3 - 1
atomprobe/SDM_1D_plot - 1
atomprobe/NN - 1
atomprobedevcode/1.0.0 - 1
ariba/.2.14.2 - 1
argos/3.0.0-beta52 - 1
angsd/0.931-realsfs - 1
angsd/.0.931-realsfs - 1
amide/1.0.5 - 1
align2rawsignal/2.0 - 1
smoke_test/tests/R/bashcmd 0 → 100755
View file @ cae6bd7b
#!/bin/bash
R --version
smoke_test/tests/R/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/anaconda/bashcmd 0 → 100755
View file @ cae6bd7b
#!/bin/bash
conda list
python -c 'import os;import sys;'
smoke_test/tests/anaconda/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/anaconda/pythoncmd 0 → 100755
View file @ cae6bd7b
smoke_test/tests/ants/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/atlas/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/bcftools/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/bedtools/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/bintest 0 → 100644
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/biobambam/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/bismark/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/blast/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/boost/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/bowtie2/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/bwa/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/cmake/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done
smoke_test/tests/ctffind/bintest 0 → 100755
View file @ cae6bd7b
#!/bin/bash
name=$( realpath $0 | xargs dirname | xargs basename )
ver=${1:-"default"}
bin_dirs=$(module show $name/$ver 2>&1 | sed -n "s/.* PATH \(.*\)/\1/p")
NAME_EXEC_EXIST=false
for bin in $bin_dirs; do
for i in $(find $bin -maxdepth 1 -executable -type f ); do
if [[ $(basename $i) == $name ]]; then
$i --version;
exit $?
fi
done
done