- 17 Mar, 2021 2 commits
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Massimiliano Culpo authored
* unit tests: mark slow tests as "maybeslow" This commit also removes the "network" marker and marks every "network" test as "maybeslow". Tests marked as db are maintained, but they're not slow anymore. * GA: require style tests to pass before running unit-tests * GA: make MacOS unit tests fail fast * GA: move all unit tests into the same workflow, run style tests as a prerequisite All the unit tests have been moved into the same workflow so that a single run of the dorny/paths-filter action can be used to ask for coverage based on the files that have been changed in a PR. The basic idea is that for PRs that introduce only changes to packages coverage is not necessary, this resulting in a faster execution of the tests. Also, for package only PRs slow unit tests are skipped. Finally, MacOS and linux unit tests are now conditional on style tests passing meaning that e.g. we won't waste a MacOS worker if we know that the PR has flake8 issues. * Addressed review comments * Skipping slow tests on MacOS for package only recipes * QA: make tests on changes correct before merging
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a-saitoh-fj authored
* py-aiobotocore: New package * py-aiobotocore: Added python dependencies, and Removed unnecessary whitespace
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- 16 Mar, 2021 16 commits
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Todd Gamblin authored
In most cases, we want condition_holds(ID) to imply any imposed constraints associated with the ID. However, the dependency relationship in Spack is special because it's "extra" conditional -- a dependency *condition* may hold, but we have decided that externals will not have dependencies, so we need a way to avoid having imposed constraints appear for nodes that don't exist. This introduces a new rule that says that constraints are imposed *unless* we define `do_not_impose(ID)`. This allows rules like dependencies, which rely on more than just spec conditions, to cancel imposed constraints. We add one special case for this: dependencies of externals.
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Todd Gamblin authored
We only consider test dependencies some of the time. Some packages are *only* test dependencies. Spack's algorithm was previously generating dependency conditions that could hold, *even* if there was no potential dependency type. - [x] change asp.py so that this can't happen -- we now only generate dependency types for possible dependencies.
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Todd Gamblin authored
This builds on #20638 by unifying all the places in the concretizer where things are conditional on specs. Previously, we duplicated a common spec conditional pattern for dependencies, virtual providers, conflicts, and externals. That was introduced in #20423 and refined in #20507, and roughly looked as follows. Given some directives in a package like: ```python depends_on("foo@1.0+bar", when="@2.0+variant") provides("mpi@2:", when="@1.9:") ``` We handled the `@2.0+variant` and `@1.9:` parts by generating generated `dependency_condition()`, `required_dependency_condition()`, and `imposed_dependency_condition()` facts to trigger rules like this: ```prolog dependency_conditions_hold(ID, Parent, Dependency) :- attr(Name, Arg1) : required_dependency_condition(ID, Name, Arg1); attr(Name, Arg1, Arg2) : required_dependency_condition(ID, Name, Arg1, Arg2); attr(Name, Arg1, Arg2, Arg3) : required_dependency_condition(ID, Name, Arg1, Arg2, Arg3); dependency_condition(ID, Parent, Dependency); node(Parent). ``` And we handled `foo@1.0+bar` and `mpi@2:` parts ("imposed constraints") like this: ```prolog attr(Name, Arg1, Arg2) :- dependency_conditions_hold(ID, Package, Dependency), imposed_dependency_condition(ID, Name, Arg1, Arg2). attr(Name, Arg1, Arg2, Arg3) :- dependency_conditions_hold(ID, Package, Dependency), imposed_dependency_condition(ID, Name, Arg1, Arg2, Arg3). ``` These rules were repeated with different input predicates for requirements (e.g., `required_dependency_condition`) and imposed constraints (e.g., `imposed_dependency_condition`) throughout `concretize.lp`. In #20638 it got to be a bit confusing, because we used the same `dependency_condition_holds` predicate to impose constraints on conditional dependencies and virtual providers. So, even though the pattern was repeated, some of the conditional rules were conjoined in a weird way. Instead of repeating this pattern everywhere, we now have *one* set of consolidated rules for conditions: ```prolog condition_holds(ID) :- condition(ID); attr(Name, A1) : condition_requirement(ID, Name, A1); attr(Name, A1, A2) : condition_requirement(ID, Name, A1, A2); attr(Name, A1, A2, A3) : condition_requirement(ID, Name, A1, A2, A3). attr(Name, A1) :- condition_holds(ID), imposed_constraint(ID, Name, A1). attr(Name, A1, A2) :- condition_holds(ID), imposed_constraint(ID, Name, A1, A2). attr(Name, A1, A2, A3) :- condition_holds(ID), imposed_constraint(ID, Name, A1, A2, A3). ``` this allows us to use `condition(ID)` and `condition_holds(ID)` to encapsulate the conditional logic on specs in all the scenarios where we need it. Instead of defining predicates for the requirements and imposed constraints, we generate the condition inputs with generic facts, and define predicates to associate the condition ID with a particular scenario. So, now, the generated facts for a condition look like this: ```prolog condition(121). condition_requirement(121,"node","cairo"). condition_requirement(121,"variant_value","cairo","fc","True"). imposed_constraint(121,"version_satisfies","fontconfig","2.10.91:"). dependency_condition(121,"cairo","fontconfig"). dependency_type(121,"build"). dependency_type(121,"link"). ``` The requirements and imposed constraints are generic, and we associate them with their meaning via the id. Here, `dependency_condition(121, "cairo", "fontconfig")` tells us that condition 121 has to do with the dependency of `cairo` on `fontconfig`, and the conditional dependency rules just become: ```prolog dependency_holds(Package, Dependency, Type) :- dependency_condition(ID, Package, Dependency), dependency_type(ID, Type), condition_holds(ID). ``` Dependencies, virtuals, conflicts, and externals all now use similar patterns, and the logic for generating condition facts is common to all of them on the python side, as well. The more specific routines like `package_dependencies_rules` just call `self.condition(...)` to get an id and generate requirements and imposed constraints, then they generate their extra facts with the returned id, like this: ```python def package_dependencies_rules(self, pkg, tests): """Translate 'depends_on' directives into ASP logic.""" for _, conditions in sorted(pkg.dependencies.items()): for cond, dep in sorted(conditions.items()): condition_id = self.condition(cond, dep.spec, pkg.name) # create a condition and get its id self.gen.fact(fn.dependency_condition( # associate specifics about the dependency w/the id condition_id, pkg.name, dep.spec.name )) # etc. ``` - [x] unify generation and logic for conditions - [x] use unified logic for dependencies - [x] use unified logic for virtuals - [x] use unified logic for conflicts - [x] use unified logic for externals LocalWords: concretizer mpi attr Arg concretize lp cairo fc fontconfig LocalWords: virtuals def pkg cond dep fn refactor github py
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Tomoyasu Nojiri authored
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Tomoyasu Nojiri authored
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Harmen Stoppels authored
Co-authored-by:
Michal Sudwoj <msudwoj@student.ethz.ch>
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Adam J. Stewart authored
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Harmen Stoppels authored
* Rewrite relative dev_spec paths internally to absolute paths in case of relocation of the environment file * Test relative paths for dev_path in environments * Add a --keep-relative flag to spack env create This ensures that relative paths of develop paths are not expanded to absolute paths when initializing the environment in a different location from the spack.yaml init file.
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Harmen Stoppels authored
* Propagate --test= for environments * Improve help comment for spack concretize --test flag * Add tests for --test with environments
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Chuck Atkins authored
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Harmen Stoppels authored
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Adam J. Stewart authored
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Adam J. Stewart authored
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Adam J. Stewart authored
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Adam J. Stewart authored
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Tomoyasu Nojiri authored
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- 15 Mar, 2021 3 commits
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Christoph Junghans authored
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a-saitoh-fj authored
* py-aioitertools: New package * py-aioitertools: Fixed python dependencies, and Fixed style of code * switch to the source build
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Vanessasaurus authored
Currently, regardless of a spec being concrete or not, we validate its variants in `spec_clauses` (part of `SpackSolverSetup`). This PR skips the check if the spec is concrete. The reason we want to do this is so that the solver setup class (really, `spec_clauses`) can be used for cases when we just want the logic statements / facts (is that what they are called?) and we don't need to re-validate an already concrete spec. We can't change existing concrete specs, and we have to be able to handle them *even if they violate constraints in the current spack*. This happens in practice if we are doing the validation for a spec produced by a different spack install. Signed-off-by:
vsoch <vsoch@users.noreply.github.com>
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- 14 Mar, 2021 1 commit
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a-saitoh-fj authored
* Update version to install py-s3fs * Update the required version of py-urllib3, and Set the dependent conditions of py-docutils
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- 13 Mar, 2021 14 commits
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Seth R. Johnson authored
As of OpenBLAS 0.3.13, leaving off `TARGET` by default optimizes most code for the host system -- adding flags that cause the resulting library to fail (SIGILL) on older systems. This change should ensure that a "x86_64" target for example will work across deployment systems. https://github.com/xianyi/OpenBLAS/issues/3139
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Vanessasaurus authored
This pull request will add the ability for a user to add a configuration argument on the fly, on the command line, e.g.,: ```bash $ spack -c config:install_tree:root:/path/to/config.yaml -c packages:all:compiler:[gcc] list --help ``` The above command doesn't do anything (I'm just getting help for list) but you can imagine having another root of packages, and updating it on the fly for a command (something I'd like to do in the near future!) I've moved the logic for config_add that used to be in spack/cmd/config.py into spack/config.py proper, and now both the main.py (where spack commands live) and spack/cmd/config.py use these functions. I only needed spack config add, so I didn't move the others. We can move the others if there are also needed in multiple places.
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Bryan Herman authored
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Bryan Herman authored
* added h5py patch file for offline installs to work * h5py v3+ deps consistent with setup.py, add patch
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Chuck Atkins authored
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Valentin Volkl authored
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Tamara Dahlgren authored
Was getting the following error: ``` $ spack test list ==> Error: issubclass() arg 1 must be a class ``` This PR adds a check in `has_test_method` (in case it is re-used elsewhere such as #22097) and ensures a class is passed to the method from `spack test list`.
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iarspider authored
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Desmond Orton authored
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Brian Van Essen authored
Updated the versions for DiHydrogen and Aluminum. Added new constraints on versions of Aluminum that are used across the software stack. Cleaned up the dependency on DiHydrogen for LBANN.
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Sinan authored
Co-authored-by:
sbulut <sbulut@3vgeomatics.com>
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a-saitoh-fj authored
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Bryan Herman authored
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Tomoyasu Nojiri authored
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- 12 Mar, 2021 4 commits
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a-saitoh-fj authored
* py-chainer: Add test method for ChainerMN (continued #21848, #21940) * py-chainer: Fixed the word in the message * py-chainer: Delete unnecessary imports * py-chainer: Incorporation of the measures pointed out in #21940 was insufficient.
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kuramoto-fj authored
* mptensor: Add test method * mptensor: Reverted the receipe on merged style * mptensor: Changed """ to #
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Sergei Shudler authored
* Added a smoke test for superlu-dist recipe * Fixed small issues following a PR review
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Paul Kuberry authored
Adds several EpetraExt_BUILD_* options as well as an Amesos2_ENABLE_Basker option. Adds `none` as an option to `gotype=`, which should be among the options since 'none' is specifically handled later in the package definition. Adds `stokhos` and `trilinoscouplings` as options in spack which already are available in CMake for Trilinos (e.g. Trilinos_ENABLE_Stokhos:BOOL=)
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