Commit c43cc977 authored by Keith Schulze's avatar Keith Schulze
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Update README with install instructions

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...@@ -3,12 +3,16 @@ Aggregate is an ImageJ plugin that semi-automates the process of detecting prote ...@@ -3,12 +3,16 @@ Aggregate is an ImageJ plugin that semi-automates the process of detecting prote
## Installing the Aggregate plugin ## Installing the Aggregate plugin
1. Please download the [latest release](https://gitlab.erc.monash.edu.au/mmi/aggregate/uploads/439840c437321f405b9eb65bd0701363/Aggregate-0.1.0.jar)
2. In ImageJ/Fiji, select Plugins -> Install PlugIn... and select the file `Aggregate-0.1.0.jar` you downloaded in step 1.
3. Restart ImageJ/Fiji.
## Using the Aggregate plugin ## Using the Aggregate plugin
The aggregate plugin was built to detect aggregates in single channel 3D confocal image stacks of DAG3-GFP experessing fish muscle; however, it should work for any single channel 3D image stack where one wants to quantify the density of aggregates in a tissue. The aggregate plugin was built to detect aggregates in single channel 3D confocal image stacks of DAG3-GFP experessing fish muscle; however, it should work for any single channel 3D image stack where one wants to quantify the density of aggregates in a tissue.
Table 1: Common parameters Table 1: Common parameters
| Parameter | Description | Parameter | Description
| :-------- | :---------- | | :-------- | :---------- |
| Estimated radius | Estimated radius of the aggregates in uM | | Estimated radius | Estimated radius of the aggregates in uM |
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