Commits · ef439d2689f5bd12e0e6ed9123e77b673c842836 · Sean Solari / exPAM

24 Nov, 2021 1 commit
- Generalised classification routine with alpha parameter · ef439d26
  Sean Solari authored Nov 24, 2021
  
  ef439d26
22 Nov, 2021 1 commit
- Typo fixes for tutorials · 55604a44
  Sean Solari authored Nov 22, 2021
  
  55604a44
19 Nov, 2021 1 commit
- Updates to visual depiction of results · 486be48a
  Sean Solari authored Nov 19, 2021
  
  486be48a
18 Nov, 2021 3 commits
- Graphical depiction of classification results. · e7fdc71a
  Sean Solari authored Nov 18, 2021
  
  e7fdc71a
- Finished draft of documentation. · e47cce69
  Sean Solari authored Nov 18, 2021
  
  e47cce69
- Update to explanation of results · d0c886e0
  Sean Solari authored Nov 18, 2021
  
  d0c886e0
17 Nov, 2021 9 commits
- taxonomic results explanation update · 8bb90b0a
  Sean Solari authored Nov 17, 2021
  
  8bb90b0a
- update to classification explanation · 10bdd8e2
  Sean Solari authored Nov 17, 2021
  
  10bdd8e2
- Image update · ea4348d6
  Sean Solari authored Nov 17, 2021
  
  ea4348d6
- Update to classification figure · 835336a1
  Sean Solari authored Nov 17, 2021
  
  835336a1
- CSS test · 1ed76446
  Sean Solari authored Nov 17, 2021
  
  1ed76446
- Gitlab css test · 18dc9c43
  Sean Solari authored Nov 17, 2021
  
  18dc9c43
- Github markdown test · da86a382
  Sean Solari authored Nov 17, 2021
  
  da86a382
- Update to setup tutorial · 0f79e948
  Sean Solari authored Nov 17, 2021
  
  0f79e948
- Update to tree building tutorial · c2dea9ab
  Sean Solari authored Nov 17, 2021
  
  c2dea9ab
16 Nov, 2021 2 commits
- Update to tree building · 3095cf3b
  Sean Solari authored Nov 16, 2021
  
  3095cf3b
- Updates to homepage · 8d42e0e7
  Sean Solari authored Nov 16, 2021
  
  8d42e0e7
16 Oct, 2021 2 commits
- Basic tutorial complete · 00f32684
  seansolari authored Oct 16, 2021
  
  00f32684
- Bug fix for using gzipped sequences when building the database: · dc882467
  seansolari authored Oct 16, 2021
  
  dc882467
11 Oct, 2021 1 commit
- Fixes to tree building cli. Tutorial update · c2e544f3
  seansolari authored Oct 11, 2021
  
  c2e544f3
09 Oct, 2021 1 commit
- Employing cutoff after conversion to taxonomy · 44f872fe
  seansolari authored Oct 09, 2021
  
  44f872fe
08 Oct, 2021 2 commits
- Bug fix for converting results to taxonomy · d5fb9cb6
  seansolari authored Oct 08, 2021
  
  d5fb9cb6
- Faster read processing · 02c5a49c
  seansolari authored Oct 08, 2021
  
  02c5a49c
03 Oct, 2021 1 commit
- Fixed reverse complement code · 9356525e
  seansolari authored Oct 03, 2021
  
  9356525e
02 Oct, 2021 1 commit
- More efficient processing draft · 44b420dc
  seansolari authored Oct 02, 2021
  
  44b420dc
25 Sep, 2021 1 commit
- More efficient read extraction using multiprocessing · 66b026cd
  seansolari authored Sep 25, 2021
  
  66b026cd
24 Sep, 2021 1 commit
- Better read processing parallelism draft · d25245a8
  seansolari authored Sep 24, 2021
  
  d25245a8
23 Sep, 2021 1 commit
- Bug fix for detecting pairs of read files · 44ff9449
  seansolari authored Sep 23, 2021
  
  44ff9449
21 Sep, 2021 3 commits
- typos · cd4e4460
  seansolari authored Sep 21, 2021
  
  cd4e4460
- Remove diagnostic prints · 6dc7a906
  seansolari authored Sep 21, 2021
  
  6dc7a906
- More efficient reverse complement comparisons · b2cbf531
  seansolari authored Sep 21, 2021
  
  b2cbf531
17 Sep, 2021 1 commit
- Jellyfish code for taking reverse complement · c0c9ea8d
  seansolari authored Sep 17, 2021
  
  c0c9ea8d
16 Sep, 2021 1 commit
- First draw for taking canonically smaller kmers · b58f232d
  seansolari authored Sep 16, 2021
  
  b58f232d
14 Sep, 2021 1 commit
- Closer look at ambiguous cases for classification · bc7bcf37
  seansolari authored Sep 14, 2021
  
  bc7bcf37
12 Sep, 2021 2 commits
- Final bug fixes for new classification · c695cc9a
  seansolari authored Sep 12, 2021
  
  c695cc9a
- Bug fixes for reverse complements · dd1405fa
  seansolari authored Sep 12, 2021
  
  dd1405fa
11 Sep, 2021 4 commits
- Updates for unit testing · acbb39e4
  seansolari authored Sep 11, 2021
  
  acbb39e4
- Flag for handling paired-end reads · 826b09b7
  seansolari authored Sep 11, 2021
  
  826b09b7
- Bug fixes for reverse complement · e9fc23b2
  seansolari authored Sep 11, 2021
  
  e9fc23b2
- Proper reverse complement from hashes · 8d849377
  seansolari authored Sep 11, 2021
  
  8d849377