Commits · sharedmemory · Sean Solari / exPAM

15 Dec, 2022 1 commit
- Bug fixes for tree making interface · e87d11d9
  Sean Solari authored Dec 15, 2022
  
  e87d11d9
24 Oct, 2022 1 commit
- Multiprocessing of sample summary files · 4124b6ac
  Sean Solari authored Oct 24, 2022
  
  4124b6ac
23 Aug, 2022 1 commit
- Bug fixes for phylotree command. · d03c31f7
  Sean Solari authored Aug 23, 2022
  
  d03c31f7
18 Aug, 2022 1 commit
- Benchmarking scripts and box plots of parameter sensitivity tests · f5e74ec5
  Sean Solari authored Aug 18, 2022
  
  f5e74ec5
17 Aug, 2022 3 commits
- Don't create taxonomic output directory until taxonomic summary requested.... · 2f967011
  Sean Solari authored Aug 17, 2022
```
Don't create taxonomic output directory until taxonomic summary requested. Changes reflected in documentation.
```
  2f967011
- Documentation fixes · 2727d2d9
  Sean Solari authored Aug 17, 2022
  
  2727d2d9
- Bug fixes for tree reduction and classification output · 8442cccd
  Sean Solari authored Aug 17, 2022
  
  8442cccd
15 Aug, 2022 1 commit
- Pruning feature added to Index tree class. Modifications to expam install instructions · 05c6adda
  Sean Solari authored Aug 15, 2022
  
  05c6adda
23 May, 2022 2 commits
- Update version number in app and github readme · 15a9faba
  Sean Solari authored May 23, 2022
  
  15a9faba
- Bug fix for ete3 module import · 5d4597d3
  Sean Solari authored May 23, 2022
  
  5d4597d3
22 May, 2022 4 commits
- Update version number · 52f741c3
  Sean Solari authored May 22, 2022
  
  52f741c3
- Updates to documentation. Bug fix for input genomes as symlinks and removing... · a0f6358e
  Sean Solari authored May 22, 2022
```
Updates to documentation. Bug fix for input genomes as symlinks and removing sequences from database.
```
  a0f6358e
- Bug fixes for running docker containers · b19d2b6e
  Sean Solari authored May 22, 2022
  
  b19d2b6e
- Add docker recipes · c099310e
  Sean Solari authored May 22, 2022
  
  c099310e
20 May, 2022 2 commits
- Update version number · 220fc612
  Sean Solari authored May 20, 2022
  
  220fc612
- Bug fixes for portable database usage · 2219f2b3
  Sean Solari authored May 20, 2022
  
  2219f2b3
19 May, 2022 2 commits
- Bug fix for finding paired reads · 57c88a29
  Sean Solari authored May 19, 2022
  
  57c88a29
- Add flexibility in specifying phylogeny path · ee39414f
  Sean Solari authored May 19, 2022
  
  ee39414f
18 May, 2022 1 commit
- Bug fixes: update numpy requirement · f6ad2d64
  Sean Solari authored May 18, 2022
  
  f6ad2d64
12 May, 2022 4 commits
- Delete unwanted files · e184fb37
  Sean Solari authored May 12, 2022
  
  e184fb37
- Merge branch 'sharedmemory' of gitlab.erc.monash.edu.au:ssol0002/pam into sharedmemory · 8e57aa83
  Sean Solari authored May 12, 2022
  
  8e57aa83
- Bug fix for multiple -d flags · 54019615
  Sean Solari authored May 12, 2022
  
  54019615
- Bug fix for supplying multiple -d flags. v1.0.7 · d91df106
  Sean Solari authored May 12, 2022
  
  d91df106
11 May, 2022 3 commits
- OOM killer instructions · e245f6ee
  Sean Solari authored May 11, 2022
  
  e245f6ee
- Added --version flag · 497d35c2
  Sean Solari authored May 11, 2022
  
  497d35c2
- Added quickstart tutorial. Revamp docs. · e95d62ee
  Sean Solari authored May 11, 2022
  
  e95d62ee
07 May, 2022 1 commit
- Bug Fixes · 2a4d8168
  Sean Solari authored May 07, 2022
  
  2a4d8168
02 May, 2022 1 commit
- Updated setup.py with extras_require · 9bc1f0c5
  Sean Solari authored May 02, 2022
  
  9bc1f0c5
01 May, 2022 2 commits
- Bug fix for converting incompatible taxids in results · 12054b70
  Sean Solari authored May 01, 2022
  
  12054b70
- Script for making taxids compatible with local ete3 taxonomy database · 367a3d70
  Sean Solari authored May 01, 2022
  
  367a3d70
26 Apr, 2022 7 commits
- Type hints fixed · 0c624549
  Sean Solari authored Apr 26, 2022
  
  0c624549
- Type hinting fixes · f2791670
  Sean Solari authored Apr 26, 2022
  
  f2791670
- Include pyx files · 4f005cc6
  Sean Solari authored Apr 26, 2022
  
  4f005cc6
- Ignore pycache · 9ceb8764
  Sean Solari authored Apr 26, 2022
  
  9ceb8764
- Bug fixes for new factoring · 74bc8cd3
  Sean Solari authored Apr 26, 2022
  
  74bc8cd3
- Bug fixes · 0e01e20b
  Sean Solari authored Apr 26, 2022
  
  0e01e20b
- Bug fixes for tree and database building · d15820b7
  Sean Solari authored Apr 26, 2022
  
  d15820b7
25 Apr, 2022 3 commits
- Bug fixes for database creation · d1d4c5da
  Sean Solari authored Apr 25, 2022
  
  d1d4c5da
- Bug fixes for cython compilation · e0779df2
  Sean Solari authored Apr 25, 2022
  
  e0779df2
- Refactored codes into isolated modules · 20df4ab3
  Sean Solari authored Apr 25, 2022
  
  20df4ab3