fixed md5sum line to stop it breaking on lines with special characters

md5_to_vault.py

@@ -63,20 +63,6 @@ class Logger(object):
         self.log.flush()
 
 
-
-# READ_PICKLE_FILE = False
-# EXPERIMENT_NAME = "13660a"
-# PICKLE_FILENAME = os.path.join(os.path.dirname(__file__), "md5_state.pickle")
-# timestamp = time.strftime("%Y-%m-%d-%H%M%S")
-# LOG_FILENAME = os.path.join(
-#     os.path.dirname(__file__),
-#     f"md5-{EXPERIMENT_NAME}-{timestamp}.log"
-# )
-# REMOTE_LOGIN = "gary.ruben@monash.edu@sftp2.synchrotron.org.au"
-# SRC_PATH = f"/data/{EXPERIMENT_NAME}/asci/output"
-# DEST_PATH = "/home/grub0002/bapcxi/vault/IMBL_2018_Oct_McGillick/output"
-
-
 def send_checksum(node, remote_login, src_path):
     """Checksums all files in the node.src directory and sends these to the
     node.dest directory across an ssh connection. The checksum file is named
@@ -116,8 +102,7 @@ def send_checksum(node, remote_login, src_path):
             filename = node.src.replace(src_path+'/', '').replace('/', '_')
 
         output = subprocess.run(
-            f"ssh {remote_login} 'cd {node.src};"
-            "md5sum $(find -maxdepth 1 -type f | cut -c3-)'"
+            f"ssh {remote_login} 'cd {node.src}; md5sum *'"
             f"| cat > {node.dest}/{filename}.md5",
             shell=True,
             check=True