remove out

smoke_test/.gitignore

 ./output_dir/
+output_dir/
 

smoke_test/batch_app_report

+#!/bin/bash
+inputfile=$1
+for app in $(cat $inputfile); do
+    version=$(ls /usr/local/Modules/modulefiles/$app)
+    mtime=360 ./application_report $app $version
+done

smoke_test/generate_bin_test

 #!/bin/bash
+USAGE_REPORT=${1:-software_usage.txt}
 NUM_MODULE=${2:-100}
 
 TESTCASE_DIR='./tests'
 
 
-USAGE_REPORT=software_usage.txt
+
 if [ ! -f $USAGE_REPORT ]; then 
     software_usage $USAGE_REPORT
 fi

smoke_test/output_dir/anaconda/5.1.0-Python3.6-gcc5

-anaconda Command line client (version 1.6.9)

smoke_test/output_dir/cuda/7.5

-nvcc: NVIDIA (R) Cuda compiler driver
-Copyright (c) 2005-2015 NVIDIA Corporation
-Built on Tue_Aug_11_14:27:32_CDT_2015
-Cuda compilation tools, release 7.5, V7.5.17
-deviceQuery Starting...
-
- CUDA Device Query (Runtime API) version (CUDART static linking)
-
-cudaGetDeviceCount returned 35
--> CUDA driver version is insufficient for CUDA runtime version
-Result = FAIL
-CUDA error at bandwidthTest.cu:255 code=35(cudaErrorInsufficientDriver) "cudaSetDevice(currentDevice)" 
-[CUDA Bandwidth Test] - Starting...
-Running on...
-
-cudaGetDeviceProperties returned 35
--> CUDA driver version is insufficient for CUDA runtime version

smoke_test/output_dir/gcc/4.9.3

-gcc (GCC) 4.9.3
-Copyright (C) 2015 Free Software Foundation, Inc.
-This is free software; see the source for copying conditions.  There is NO
-warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-

smoke_test/output_dir/gcc/5.4.0

-gcc (GCC) 5.4.0
-Copyright (C) 2015 Free Software Foundation, Inc.
-This is free software; see the source for copying conditions.  There is NO
-warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-

smoke_test/output_dir/gcc/6.1.0

-gcc (GCC) 6.1.0
-Copyright (C) 2016 Free Software Foundation, Inc.
-This is free software; see the source for copying conditions.  There is NO
-warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-

smoke_test/output_dir/gcc/8.1.0

-gcc (GCC) 8.1.0
-Copyright (C) 2018 Free Software Foundation, Inc.
-This is free software; see the source for copying conditions.  There is NO
-warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-

smoke_test/output_dir/gmp/6.1.2

-find: ‘/usr/local/gmp/6.1.2/bin’: No such file or directory

smoke_test/output_dir/htslib/1.9-gcc5

-htsfile (htslib) 1.9-20-ge1650a9
-Copyright (C) 2018 Genome Research Ltd.
-tabix (htslib) 1.9-20-ge1650a9
-Copyright (C) 2018 Genome Research Ltd.
-bgzip (htslib) 1.9-20-ge1650a9
-Copyright (C) 2018 Genome Research Ltd.

smoke_test/output_dir/java/1.8.0_77

-Unrecognized option: --version
-Error: Could not create the Java Virtual Machine.
-Error: A fatal exception has occurred. Program will exit.