more test and auto generated bin test

smoke_test/.gitignore

smoke_test/output_dir/anaconda/2019.03-Python3.7-gcc5

smoke_test/output_dir/anaconda/5.1.0-Python3.6-gcc5

smoke_test/output_dir/atlas/3.10.2-gcc4

smoke_test/output_dir/atlas/3.10.2-gcc5

smoke_test/output_dir/bedtools/2.26.0

smoke_test/output_dir/bismark/v0.19.1

smoke_test/output_dir/bowtie2/2.2.9

smoke_test/output_dir/cuda/10.1

smoke_test/output_dir/cuda/7.5

smoke_test/output_dir/cuda/8.0.61

smoke_test/output_dir/cuda/9.1

smoke_test/output_dir/cutadapt/0.16

smoke_test/output_dir/deeptools/3.1.2

smoke_test/output_dir/fastqc/0.11.7

smoke_test/output_dir/fftw/3.3.4-gcc

smoke_test/output_dir/fftw/3.3.5-gcc

smoke_test/output_dir/fftw/3.3.5-gcc5

smoke_test/output_dir/fsl/5.0.11

smoke_test/output_dir/fsl/6.0.3