get a few more test case going, and update fail cond in smoke_test

smoke_test/output_dir/atlas/3.10.2-gcc4

smoke_test/output_dir/atlas/3.10.2-gcc5

smoke_test/output_dir/cuda/7.5

smoke_test/output_dir/fftw/3.3.4-gcc

smoke_test/output_dir/fftw/3.3.5-gcc

smoke_test/output_dir/fftw/3.3.5-gcc5

smoke_test/output_dir/fsl/6.0.3

smoke_test/output_dir/gcc/6.1.0

smoke_test/output_dir/geos/3.6

smoke_test/output_dir/gmp/6.1.2

smoke_test/output_dir/hdf5/1.10.0-patch1

smoke_test/output_dir/htslib/1.9-gcc5

smoke_test/output_dir/lapack/3.6.1-gcc4

smoke_test/output_dir/lapack/3.6.1-gcc5

smoke_test/output_dir/libtiff/3.9.7

smoke_test/output_dir/mpfr/3.1.5

smoke_test/output_dir/picard/2.9.2

smoke_test/output_dir/python/3.7.3-system

smoke_test/output_dir/report.txt

smoke_test/output_dir/samtools/1.9-gcc5