Merge branch 'modules' into 'master'

Modules



See merge request !80

Former-commit-id: 28121f67

roles/enable_lmod/tasks/main.yml

----
-- include_vars: "{{ ansible_os_family }}.yml"
-
-- name: install lua
-  yum: name={{ item }} state=installed
-  with_items:
-    - lua
-    - lua-filesystem
-    - lua-posix
-  sudo: true
-  when: ansible_os_family == 'RedHat'
-
-- name: install lua
-  apt: name={{ item }} state=installed
-  with_items:
-    - lua5.2
-    - lua5.2
-    - lua-filesystem
-    - lua-bitop
-    - lua-posix
-    - liblua5.2-0
-    - liblua5.2-dev
-    - tcl
-  sudo: true
-  when: ansible_os_family == 'Debian'
-
-- name: link bash
-  file: src={{ soft_dir }}/lmod/lmod/init/bash dest=/etc/profile.d/lmod.sh state=link
-  sudo: true
-
-- name: link csh
-  file: src={{ soft_dir }}/lmod/lmod/init/cshrc dest=/etc/profile.d/lmod.csh state=link
-  sudo: true

roles/enable_lmod/vars/Debian.yml

----
-lua_include: /usr/include/lua5.2

roles/enable_lmod/vars/RedHat.yml

----
-lua_include: /usr/local

roles/enable_modules/tasks/main.yml

+---
+
+- name: template lmod bash
+  template: src=lmod.sh.j2 dest=/etc/profile.d/lmod.sh 
+  become: true
+  become_user: root
+  when: default_modules == "lmod"
+
+- name: template lmod csh
+  template: src=lmod.csh.j2 dest=/etc/profile.d/lmod.csh
+  become: true
+  become_user: root
+  when: default_modules == "lmod"
+
+- name: remove modulecmd bash
+  file: path=/etc/profile.d/modulecmd.sh state=absent
+  become: true
+  become_user: root
+  when: default_modules == "lmod"
+
+- name: remove modulcmd csh
+  file: path=/etc/profile.d/modulecmd.csh state=absent
+  become: true
+  become_user: root
+  when: default_modules == "lmod"
+
+- name: template modulecmd bash
+  template: src=modulecmd.sh.j2 dest=/etc/profile.d/modulecmd.sh
+  become: true
+  become_user: root
+  when: default_modules == "modulecmd"
+
+- name: template modulecmd csh
+  template: src=modulecmd.csh.j2 dest=/etc/profile.d/modulecmd.csh
+  become: true
+  become_user: root
+  when: default_modules == "modulecmd"
+
+- name: remove lmod bash
+  file: path=/etc/profile.d/lmod.sh state=absent
+  become: true
+  become_user: root
+  when: default_modules == "modulecmd"
+
+- name: remove modulcmd csh
+  file: path=/etc/profile.d/lmod.csh state=absent
+  become: true
+  become_user: root
+  when: default_modules == "modulecmd"

roles/enable_modules/templates/lmod.csh.j2

+#!/bin/csh
+# -*- shell-script -*-
+########################################################################
+#  This is the system wide source file for setting up
+#  modules:
+#
+########################################################################
+
+set MY_NAME="{{ lmoddir }}/lmod/lmod/init/cshrc"
+
+
+
+if ( ! $?MODULEPATH_ROOT ) then
+    if ( $?USER) then
+        setenv USER $LOGNAME
+    endif
+
+    set UNAME = `uname`
+    setenv LMOD_sys    $UNAME
+
+    setenv LMOD_arch   `uname -m`
+    if ( "x$UNAME" == xAIX ) then
+        setenv LMOD_arch   rs6k
+    endif
+
+    setenv TARG_TITLE_BAR_PAREN " "
+    setenv LMOD_FULL_SETTARG_SUPPORT no
+    setenv LMOD_SETTARG_CMD     :
+    setenv LMOD_COLORIZE        yes
+    setenv LMOD_PREPEND_BLOCK   normal
+    setenv MODULEPATH_ROOT      "{{ lmoddir }}/modulefiles"
+    setenv MODULEPATH           `{{ lmoddir }}/lmod/lmod/libexec/addto --append MODULEPATH $MODULEPATH_ROOT/$LMOD_sys $MODULEPATH_ROOT/Core`
+    setenv MODULEPATH           `{{ lmoddir }}/lmod/lmod/libexec/addto --append MODULEPATH {{ lmoddir }}/lmod/lmod/modulefiles/Core`
+    setenv MODULEPATH           "/usr/local/Modules/modulefiles"
+    setenv MODULESHOME          "{{ lmoddir }}/lmod/lmod"
+    setenv BASH_ENV             "$MODULESHOME/init/bash"
+
+    #
+    # If MANPATH is empty, Lmod is adding a trailing ":" so that
+    # the system MANPATH will be found
+    if ( ! $?MANPATH ) then
+      setenv MANPATH :
+    endif
+    setenv MANPATH `{{ lmoddir }}/lmod/lmod/libexec/addto MANPATH {{ lmoddir }}/lmod/lmod/share/man`
+
+endif
+
+if ( -f  {{ lmoddir }}/lmod/lmod/init/csh  ) then
+  source {{ lmoddir }}/lmod/lmod/init/csh
+endif

roles/enable_modules/templates/lmod.sh.j2

+#!/bin/bash
+# -*- shell-script -*-
+
+
+LMOD_PKG={{ lmoddir}}/lmod/lmod
+LMOD_DIR={{ lmoddir }}/lmod/lmod/libexec
+LMOD_CMD={{ lmoddir }}/lmod/lmod/libexec/lmod
+MODULESHOME={{ lmoddir }}/lmod/lmod
+MODULEPATH=/usr/local/Modules/modulefiles
+export LMOD_PKG
+export LMOD_CMD
+export LMOD_DIR
+export MODULESHOME
+
+########################################################################
+#  Define the module command:  The first line runs the "lmod" command
+#  to generate text:
+#      export PATH="..."
+#  then the "eval" converts the text into changes in the current shell.
+#
+#  The second command is the settarg command.  Normally LMOD_SETTARG_CMD
+#  is undefined or is ":".  Either way the eval does nothing.  When the
+#  settarg module is loaded, it defines LMOD_SETTARG_CMD.  The settarg
+#  command knows how to read the ModuleTable that Lmod maintains and
+#  generates a series of env. vars that describe the current state of
+#  loaded modules.  So if one is on a x86_64 linux computer with gcc/4.7.2
+#  and openmpi/1.6.3 loaded, then settarg will assign:
+#
+#     TARG=_x86_64_gcc-4.7.2_openmpi-1.6.3
+#     TARG_COMPILER=gcc-4.7.2
+#     TARG_COMPILER_FAMILY=gcc
+#     TARG_MACH=x86_64
+#     TARG_MPI=openmpi-1.6.3
+#     TARG_MPI_FAMILY=openmpi
+#     TARG_SUMMARY=x86_64_gcc-4.7.2_openmpi-1.6.3
+#     TARG_TITLE_BAR=gcc-4.7.2 O-1.6.3
+#     TARG_TITLE_BAR_PAREN=(gcc-4.7.2 O-1.6.3)
+#
+#  unloading openmpi/1.6.3 automatically changes these vars to be:
+#
+#     TARG=_x86_64_gcc-4.6.3
+#     TARG_COMPILER=gcc-4.6.3
+#     TARG_COMPILER_FAMILY=gcc
+#     TARG_MACH=x86_64
+#     TARG_SUMMARY=x86_64_gcc-4.6.3
+#     TARG_TITLE_BAR=gcc-4.6.3
+#     TARG_TITLE_BAR_PAREN=(gcc-4.6.3)
+#
+# See Lmod web site for more details.
+
+module()
+{
+  eval $($LMOD_CMD bash "$@") 
+  [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
+}
+
+
+if [ "${LMOD_SETTARG_CMD:-:}" != ":" ]; then
+  settarg () {
+    eval $(${LMOD_SETTARG_CMD:-:} -s sh "$@" )
+  }
+fi
+
+
+########################################################################
+#  ml is a shorthand tool for people who can't type moduel, err, module
+#  It is also a combination command:
+#     ml            -> module list
+#     ml gcc        -> module load gcc
+#     ml -gcc intel -> module unload gcc; module load intel
+#  It does much more do: "ml --help" for more information.
+
+
+unalias ml > /dev/null 2>&1
+ml()
+{
+  eval $($LMOD_DIR/ml_cmd "$@")
+}
+
+export_module=$(echo "YES" | tr '[:upper:]' '[:lower:]')
+if [ -n "$BASH_VERSION" -a "$export_module" != no ]; then
+  export -f module
+  export -f ml
+fi
+unset export_module
+
+########################################################################
+#  clearMT removes the ModuleTable from your environment.  It is rarely
+#  needed but it useful sometimes.
+
+clearMT()
+{
+  eval $($LMOD_DIR/clearMT_cmd bash)
+}
+
+########################################################################
+#  The following make the action of the settarg available to the titlebar
+#  for both xterm's and screen but only for interactive shells.
+if [ "$PS1" ]; then
+  if [ -n "$LMOD_FULL_SETTARG_SUPPORT" -a "$LMOD_FULL_SETTARG_SUPPORT" != no ]; then
+    xSetTitleLmod()
+    {
+      builtin echo -n -e "\033]2;$1\007";
+    }
+    SET_TITLE_BAR=:
+
+    case $TERM in
+      xterm*)
+        SET_TITLE_BAR=xSetTitleLmod
+        ;;
+    esac
+
+    SHOST=${SHOST-${HOSTNAME%%.*}}
+    precmd()
+    {
+      eval $(${LMOD_SETTARG_CMD:-:} -s bash)
+      ${SET_TITLE_BAR:-:} "${TARG_TITLE_BAR_PAREN}${USER}@${SHOST}:${PWD/#$HOME/~}"
+      ${USER_PROMPT_CMD:-:}
+    }
+
+    # define the PROMPT_COMMAND to be precmd iff it isn't defined already.
+    : ${PROMPT_COMMAND:=precmd}
+  fi
+fi
+
+########################################################################
+#  Make tab completions available to bash users.
+
+if [ ${BASH_VERSINFO:-0} -ge 3 ] && [ -r  {{ lmoddir }}/lmod/lmod/init/lmod_bash_completions ] && [ -n "$PS1" ]; then
+ . {{ lmoddir }}/lmod/lmod/init/lmod_bash_completions
+fi

roles/enable_modules/templates/modulecmd.csh.j2

+if ($?tcsh) then
+	set modules_shell="tcsh"
+else
+	set modules_shell="csh"
+endif
+set exec_prefix='/usr/bin'
+
+set prefix=""
+set postfix=""
+
+if ( $?histchars ) then
+  set histchar = `echo $histchars | cut -c1`
+  set _histchars = $histchars
+
+  set prefix  = 'unset histchars;'
+  set postfix = 'set histchars = $_histchars;'
+else
+  set histchar = \!
+endif
+
+if ($?prompt) then
+  set prefix  = "$prefix"'set _prompt="$prompt";set prompt="";'
+  set postfix = "$postfix"'set prompt="$_prompt";unset _prompt;'
+endif
+
+if ($?noglob) then
+  set prefix  = "$prefix""set noglob;"
+  set postfix = "$postfix""unset noglob;"
+endif
+set postfix = "set _exit="'$status'"; $postfix; /usr/bin/test 0 = "'$_exit;'
+
+alias module $prefix'eval `'$exec_prefix'/modulecmd '$modules_shell' '$histchar'*`; '$postfix
+unset exec_prefix
+unset prefix
+unset postfix
+
+setenv MODULESHOME /usr/share/Modules
+
+if (! $?MODULEPATH ) then
+  setenv MODULEPATH `sed -n 's/[ 	#].*$//; /./H; $ { x; s/^\n//; s/\n/:/g; p; }' ${MODULESHOME}/init/.modulespath`:/usr/local/Modules/modulefiles
+endif
+
+if (! $?LOADEDMODULES ) then
+  setenv LOADEDMODULES ""
+endif

roles/enable_modules/templates/modulecmd.sh.j2

+
+module() { eval `/usr/bin/modulecmd bash $*`;  /usr/local/hpcusr/latest/bin/modulelog $*;}
+export -f module
+
+MODULESHOME=/usr/share/Modules
+export MODULESHOME
+
+if [ "${LOADEDMODULES:-}" = "" ]; then
+  LOADEDMODULES=
+  export LOADEDMODULES
+fi
+
+if [ "${MODULEPATH:-}" = "" ]; then
+  MODULEPATH=`sed -n 's/[ 	#].*$//; /./H; $ { x; s/^\n//; s/\n/:/g; p; }' ${MODULESHOME}/init/.modulespath`:/usr/local/Modules/modulefiles
+  export MODULEPATH
+fi
+
+if [ ${BASH_VERSINFO:-0} -ge 3 ] && [ -r ${MODULESHOME}/init/bash_completion ]; then
+ . ${MODULESHOME}/init/bash_completion
+fi

roles/enable_lmod/vars/main.yml → roles/enable_modules/vars/main.yml

 ---
 source_dir: /tmp
-soft_dir: /opt/lmod/
+lmoddir: /opt/lmod
+modulecmddir: /usr/share
 lmod_version: 5.8.6