Merge branch 'smoke_test' into 'master'

smoke_test/.gitignore

smoke_test/application_report

smoke_test/generate_bin_test

smoke_test/listdeps

smoke_test/smoke_test

smoke_test/software_usage

smoke_test/tests/R/bashcmd

smoke_test/tests/R/bintest

smoke_test/tests/anaconda/bashcmd

smoke_test/tests/anaconda/bintest

smoke_test/tests/anaconda/pythoncmd

smoke_test/tests/ants/bintest

smoke_test/tests/atlas/bintest

smoke_test/tests/bcftools/bintest

smoke_test/tests/bedtools/bintest

smoke_test/tests/bintest

smoke_test/tests/biobambam/bintest

smoke_test/tests/bismark/bintest

smoke_test/tests/blast/bintest

smoke_test/tests/boost/bintest